Strain Fitness in Pseudomonas putida KT2440 around PP_4304

Experiment: R2A with Fusaric 480 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 480 ug/mL
4,894,587	+				-0.4
4,894,588	-				+1.1
4,894,588	-				+0.4
4,894,588	-				-0.5
4,894,588	-				-3.6
4,894,588	-				-0.5
4,894,588	-				-0.2
4,894,589	+				+0.2
4,894,589	+				+0.4
4,894,590	-				-0.4
4,894,598	+				-1.4
4,894,602	+				-2.3
4,894,602	+				-0.2
4,894,602	+				-0.2
4,894,603	-				-0.7
4,894,603	-				-0.3
4,894,603	-				+0.9
4,894,660	+				+0.8
4,894,660	+				-0.1
4,894,661	-				-0.4
4,894,661	-				+0.1
4,894,663	-				+1.2
4,894,698	+				-0.5
4,894,698	+				-0.7
4,894,698	+				+0.1
4,894,698	+				+0.2
4,894,698	+				-1.6
4,894,699	-				+0.1
4,894,844	+		PP_4303	0.25	+0.7
4,894,845	-		PP_4303	0.25	+0.1
4,894,871	+		PP_4303	0.29	-3.9
4,894,871	+		PP_4303	0.29	-0.1
4,894,872	-		PP_4303	0.29	-0.2
4,894,900	-		PP_4303	0.33	-0.3
4,894,917	+		PP_4303	0.35	+0.2
4,894,918	-		PP_4303	0.35	-2.1
4,894,918	-		PP_4303	0.35	-0.3
4,894,918	-		PP_4303	0.35	+0.3
4,894,949	+		PP_4303	0.39	+0.4
4,895,005	+		PP_4303	0.47	-0.7
4,895,005	+		PP_4303	0.47	-0.7
4,895,006	-		PP_4303	0.47	+0.9
4,895,006	-		PP_4303	0.47	-0.8
4,895,058	+		PP_4303	0.54	-1.3
4,895,162	-		PP_4303	0.68	-0.7
4,895,167	+		PP_4303	0.69	-1.0
4,895,167	+		PP_4303	0.69	-0.0
4,895,167	+		PP_4303	0.69	-0.1
4,895,167	+		PP_4303	0.69	-1.2
4,895,167	+		PP_4303	0.69	+0.2
4,895,167	+		PP_4303	0.69	+0.5
4,895,167	+		PP_4303	0.69	-0.2
4,895,168	-		PP_4303	0.69	+0.1
4,895,168	-		PP_4303	0.69	-0.2
4,895,168	-		PP_4303	0.69	+0.5
4,895,168	-		PP_4303	0.69	-0.6
4,895,168	-		PP_4303	0.69	-0.1
4,895,168	-		PP_4303	0.69	-0.6
4,895,168	-				-1.0
4,895,225	+		PP_4303	0.76	+0.8
4,895,226	-		PP_4303	0.77	-1.5
4,895,226	-		PP_4303	0.77	-0.4
4,895,226	-		PP_4303	0.77	-0.8
4,895,239	+		PP_4303	0.78	-0.5
4,895,239	+		PP_4303	0.78	-1.4
4,895,239	+		PP_4303	0.78	-0.7
4,895,240	-		PP_4303	0.78	+0.3
4,895,240	-		PP_4303	0.78	-0.1
4,895,266	+		PP_4303	0.82	-0.5
4,895,267	-		PP_4303	0.82	+0.2
4,895,267	-		PP_4303	0.82	+0.3
4,895,267	-		PP_4303	0.82	+0.3
4,895,267	-		PP_4303	0.82	-0.2
4,895,348	+				+0.7
4,895,348	+				+0.3
4,895,348	+				+0.7
4,895,349	-				-0.5
4,895,349	-				-0.5
4,895,349	-				-0.2
4,895,350	+				-2.5
4,895,350	+				-0.4
4,895,350	+				+0.2
4,895,350	+				-2.0
4,895,350	+				+0.1
4,895,350	+				+0.4
4,895,351	-				+0.2
4,895,351	-				+0.7
4,895,351	-				+1.8
4,895,351	-				-1.1
4,895,351	-				-0.8
4,895,351	-				+0.3
4,895,389	-				+0.9
4,895,432	+				+0.7
4,895,458	+				+1.2
4,895,459	-				-1.1
4,895,512	+				-2.1
4,895,513	-				-0.4
4,895,525	+				+1.7
4,895,526	-				-0.1
4,895,565	+				+0.9
4,895,566	-				+0.1
4,895,702	+		PP_4304	0.19	-1.7
4,895,759	+		PP_4304	0.26	-1.7
4,895,759	+		PP_4304	0.26	-0.7
4,895,759	+		PP_4304	0.26	+1.6
4,895,760	-		PP_4304	0.26	-1.6
4,895,760	-		PP_4304	0.26	+0.2
4,895,760	-		PP_4304	0.26	-1.3
4,895,760	-		PP_4304	0.26	+0.1
4,895,760	-		PP_4304	0.26	-0.4
4,895,760	-		PP_4304	0.26	-1.2
4,895,760	-		PP_4304	0.26	-0.3
4,895,774	+		PP_4304	0.28	-1.0
4,895,774	+		PP_4304	0.28	+0.4
4,895,775	-		PP_4304	0.28	-0.6
4,895,799	-		PP_4304	0.31	-1.1
4,895,813	+		PP_4304	0.32	-0.3
4,895,814	-		PP_4304	0.33	-1.4
4,895,861	+		PP_4304	0.38	-1.3
4,895,865	-		PP_4304	0.39	-0.3
4,895,865	-		PP_4304	0.39	-2.0
4,895,865	-		PP_4304	0.39	-1.2
4,895,865	-		PP_4304	0.39	-1.1
4,895,880	-		PP_4304	0.41	-1.6
4,895,926	-		PP_4304	0.46	-0.1
4,895,926	-		PP_4304	0.46	-0.7
4,895,961	-		PP_4304	0.50	+0.8
4,895,961	-		PP_4304	0.50	-0.1
4,896,053	+		PP_4304	0.62	-0.2
4,896,054	-		PP_4304	0.62	+1.0
4,896,082	+		PP_4304	0.65	+0.1
4,896,104	+		PP_4304	0.68	-0.3
4,896,104	+		PP_4304	0.68	+0.7
4,896,104	+		PP_4304	0.68	-1.0
4,896,105	-		PP_4304	0.68	-2.0
4,896,105	-		PP_4304	0.68	+0.1
4,896,105	-		PP_4304	0.68	+0.0
4,896,203	+		PP_4304	0.80	-0.9
4,896,235	+		PP_4304	0.84	-3.3
4,896,369	-				-0.1
4,896,395	+				+1.4
4,896,407	+				-1.0
4,896,408	-				+0.7
4,896,408	-				-0.9
4,896,480	+				+0.2
4,896,510	+				+0.2
4,896,511	-				-0.1
4,896,511	-				-1.0
4,896,513	-				+1.5
4,896,513	-				-3.4
4,896,527	+				-1.2
4,896,646	+				-1.8
4,896,647	-				-0.7
4,896,666	-				+1.2
4,896,686	+		PP_4305	0.11	+0.4
4,896,686	+		PP_4305	0.11	-0.8
4,896,686	+		PP_4305	0.11	-1.7
4,896,687	-		PP_4305	0.11	-1.4
4,896,687	-		PP_4305	0.11	-1.6
4,896,695	+		PP_4305	0.12	-2.6
4,896,695	+		PP_4305	0.12	-0.6
4,896,695	+		PP_4305	0.12	-3.1
4,896,695	+		PP_4305	0.12	-1.3
4,896,696	-		PP_4305	0.12	+2.0
4,897,043	+		PP_4305	0.47	-1.5
4,897,043	+		PP_4305	0.47	+0.3
4,897,044	-		PP_4305	0.47	-2.2
4,897,044	-		PP_4305	0.47	+0.0
4,897,045	+		PP_4305	0.47	-0.6
4,897,045	+		PP_4305	0.47	+0.7
4,897,045	+		PP_4305	0.47	+0.1
4,897,045	+		PP_4305	0.47	-1.9
4,897,045	+		PP_4305	0.47	-0.1
4,897,045	+		PP_4305	0.47	-0.2
4,897,045	+		PP_4305	0.47	-0.5
4,897,045	+		PP_4305	0.47	+0.0
4,897,045	+		PP_4305	0.47	-0.5
4,897,045	+		PP_4305	0.47	-1.8
4,897,046	-		PP_4305	0.47	+1.8
4,897,046	-		PP_4305	0.47	-0.8
4,897,046	-		PP_4305	0.47	-1.0
4,897,046	-		PP_4305	0.47	+0.4
4,897,049	+		PP_4305	0.47	+0.7
4,897,049	+		PP_4305	0.47	-0.4
4,897,050	-		PP_4305	0.48	+0.5
4,897,050	-		PP_4305	0.48	+1.1
4,897,068	-		PP_4305	0.49	+0.1
4,897,071	+		PP_4305	0.50	-2.8
4,897,071	+		PP_4305	0.50	-1.2
4,897,071	+		PP_4305	0.50	-2.0
4,897,071	+		PP_4305	0.50	-3.1
4,897,072	-		PP_4305	0.50	-0.3
4,897,072	-		PP_4305	0.50	-0.4
4,897,281	+		PP_4305	0.71	+0.3
4,897,282	-		PP_4305	0.71	-0.3
4,897,323	+		PP_4305	0.75	+0.6
4,897,323	+		PP_4305	0.75	+0.8
4,897,324	-		PP_4305	0.75	-3.2
4,897,362	-		PP_4305	0.79	-1.2
4,897,362	-		PP_4305	0.79	+0.1