Strain Fitness in Pseudomonas putida KT2440 around PP_3298

Experiment: R2A with Fusaric 480 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 480 ug/mL
3,730,119	+				+0.9
3,730,173	+				-0.2
3,730,174	-				-0.9
3,730,174	-				-0.0
3,730,215	-				+0.7
3,730,218	-				+0.6
3,730,218	-				+0.3
3,730,218	-				-0.9
3,730,218	-				-0.4
3,730,222	+				-1.3
3,730,223	-				+0.3
3,730,223	-				-1.9
3,730,240	-		PP_3297	0.12	-0.1
3,730,339	+		PP_3297	0.31	+1.4
3,730,355	+		PP_3297	0.34	-0.7
3,730,356	-		PP_3297	0.34	-1.2
3,730,357	+		PP_3297	0.34	-0.1
3,730,395	-		PP_3297	0.41	+0.3
3,730,395	-		PP_3297	0.41	-0.5
3,730,395	-		PP_3297	0.41	-0.4
3,730,481	-		PP_3297	0.58	-0.6
3,730,481	-		PP_3297	0.58	-0.5
3,730,562	+				-0.4
3,730,643	+		PP_3297	0.88	-0.4
3,730,643	+				+0.1
3,730,643	+		PP_3297	0.88	-0.3
3,730,643	+		PP_3297	0.88	+0.3
3,730,644	-		PP_3297	0.88	+0.3
3,730,644	-		PP_3297	0.88	+0.3
3,730,644	-		PP_3297	0.88	-0.7
3,730,683	-				+1.1
3,730,683	-				+0.8
3,730,683	-				-1.0
3,730,683	-				+0.8
3,730,742	+				-1.4
3,730,768	-				+0.4
3,730,816	+				-0.4
3,730,816	+				+1.4
3,730,817	-				-3.4
3,730,817	-				-1.1
3,730,817	-				+0.0
3,730,823	+				+0.6
3,730,823	+				-0.4
3,730,823	+				-0.7
3,730,824	-				-2.7
3,730,824	-				+0.5
3,730,842	+				-0.3
3,730,842	+				+0.7
3,730,843	-				+1.5
3,730,843	-				-0.6
3,730,843	-				-0.1
3,730,993	-				-0.4
3,731,055	+				+0.9
3,731,055	+				+0.9
3,731,055	+				+1.0
3,731,056	-				-0.1
3,731,059	+				-3.2
3,731,059	+				+1.1
3,731,060	-				-1.0
3,731,101	-				+0.3
3,731,101	-				-2.1
3,731,162	+		PP_3298	0.12	-0.2
3,731,163	-		PP_3298	0.12	-0.3
3,731,233	+		PP_3298	0.26	+0.4
3,731,248	-		PP_3298	0.29	-1.0
3,731,257	-		PP_3298	0.31	+0.8
3,731,285	-		PP_3298	0.36	+1.4
3,731,290	+		PP_3298	0.37	-1.4
3,731,290	+		PP_3298	0.37	-0.8
3,731,290	+		PP_3298	0.37	+1.9
3,731,291	-		PP_3298	0.37	+1.0
3,731,291	-		PP_3298	0.37	-1.0
3,731,291	-		PP_3298	0.37	+0.1
3,731,291	-		PP_3298	0.37	-0.9
3,731,291	-		PP_3298	0.37	+0.5
3,731,291	-		PP_3298	0.37	-0.9
3,731,396	+		PP_3298	0.58	-1.1
3,731,397	-		PP_3298	0.58	-1.2
3,731,435	-		PP_3298	0.66	-1.9
3,731,572	-				+0.9
3,731,616	+				-0.4
3,731,616	+				-0.5
3,731,617	-				+0.0
3,731,617	-				-0.7
3,731,651	+				+0.0
3,731,651	+				+1.1
3,731,652	-				-1.4
3,731,714	+				-0.1
3,731,742	+				-3.1
3,731,743	-				-0.9
3,731,743	-				-0.4
3,731,766	-				-0.5
3,731,766	-				-3.8
3,731,830	-				+0.6
3,731,839	+				-0.8
3,731,839	+				+0.7
3,731,839	+				-1.4
3,731,840	-				-0.4
3,731,840	-				-0.4
3,731,933	+		PP_3299	0.11	+1.6
3,731,951	+		PP_3299	0.12	+0.0
3,731,952	-		PP_3299	0.12	-2.0
3,731,952	-		PP_3299	0.12	-0.5
3,731,985	-		PP_3299	0.14	-0.1
3,732,084	+		PP_3299	0.21	+1.0
3,732,084	+		PP_3299	0.21	-0.1
3,732,084	+		PP_3299	0.21	+0.3
3,732,085	-		PP_3299	0.21	+1.5
3,732,125	+		PP_3299	0.24	-0.6
3,732,179	+				+0.9
3,732,180	-		PP_3299	0.28	+1.0
3,732,180	-		PP_3299	0.28	-2.5
3,732,226	+				-1.1
3,732,227	-		PP_3299	0.31	-0.9
3,732,252	-		PP_3299	0.32	-2.0
3,732,270	+		PP_3299	0.34	+0.5
3,732,271	-		PP_3299	0.34	-0.5
3,732,433	+		PP_3299	0.45	+1.0
3,732,553	-		PP_3299	0.53	+0.5