Strain Fitness in Pseudomonas putida KT2440 around PP_3200

Experiment: R2A with Fusaric 480 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 480 ug/mL
3,628,403	+		PP_3199	0.17	-3.7
3,628,442	+		PP_3199	0.21	-0.5
3,628,442	+		PP_3199	0.21	-1.0
3,628,443	-		PP_3199	0.21	-1.9
3,628,443	-		PP_3199	0.21	-1.5
3,628,443	-		PP_3199	0.21	-1.6
3,628,665	-		PP_3199	0.40	-0.9
3,628,808	+		PP_3199	0.53	+0.8
3,628,809	-		PP_3199	0.53	+0.4
3,628,809	-		PP_3199	0.53	+0.2
3,628,862	+		PP_3199	0.58	-0.9
3,628,862	+		PP_3199	0.58	+0.1
3,629,566	-		PP_3200	0.11	+0.8
3,629,592	+		PP_3200	0.12	-1.2
3,629,715	+		PP_3200	0.20	-1.2
3,629,715	+		PP_3200	0.20	-1.1
3,629,715	+		PP_3200	0.20	-2.0
3,629,716	-		PP_3200	0.20	-1.4
3,629,716	-		PP_3200	0.20	+0.2
3,629,719	+				-0.5
3,629,719	+		PP_3200	0.20	+0.3
3,629,719	+		PP_3200	0.20	+0.9
3,629,719	+		PP_3200	0.20	+0.4
3,629,720	-		PP_3200	0.20	+0.5
3,629,720	-		PP_3200	0.20	-1.8
3,629,720	-		PP_3200	0.20	-0.5
3,629,770	+		PP_3200	0.23	-1.3
3,629,770	+		PP_3200	0.23	-0.1
3,629,816	-		PP_3200	0.25	-0.9
3,629,816	-		PP_3200	0.25	-0.3
3,629,892	+		PP_3200	0.30	-0.9
3,629,893	-		PP_3200	0.30	-0.6
3,629,893	-		PP_3200	0.30	+0.9
3,629,948	-		PP_3200	0.33	-1.3
3,630,128	-		PP_3200	0.44	-0.4
3,630,128	-		PP_3200	0.44	+0.3
3,630,130	+		PP_3200	0.44	-1.2
3,630,131	-				+0.3
3,630,131	-		PP_3200	0.44	-2.8
3,630,131	-		PP_3200	0.44	-0.7
3,630,171	+		PP_3200	0.46	-1.8
3,630,175	+		PP_3200	0.46	-0.7
3,630,175	+		PP_3200	0.46	-3.8
3,630,175	+		PP_3200	0.46	-0.0
3,630,352	+		PP_3200	0.57	+0.9
3,630,352	+		PP_3200	0.57	-0.5
3,630,353	-		PP_3200	0.57	-0.0
3,630,393	-		PP_3200	0.59	+0.9
3,630,393	-		PP_3200	0.59	-2.4
3,630,393	-		PP_3200	0.59	+0.8
3,630,446	-		PP_3200	0.62	+0.6
3,630,455	-		PP_3200	0.63	+0.6
3,630,863	-		PP_3200	0.87	-0.3
3,630,863	-		PP_3200	0.87	+0.0
3,630,863	-		PP_3200	0.87	+0.3
3,630,863	-		PP_3200	0.87	-2.3
3,630,985	+				+1.2
3,630,986	-				-1.8
3,631,118	+				+0.0
3,631,122	-				-0.3
3,631,291	-		PP_5590	0.13	-2.6
3,631,291	-		PP_5590	0.13	+1.5
3,631,291	-		PP_5590	0.13	-0.2
3,631,311	+		PP_5590	0.15	+1.1
3,631,449	+		PP_5590	0.25	-0.6
3,631,449	+		PP_5590	0.25	-0.5
3,631,449	+		PP_5590	0.25	-1.1
3,631,450	-		PP_5590	0.25	-0.2
3,631,504	-		PP_5590	0.29	+0.1
3,631,884	+		PP_5590	0.57	-3.8
3,631,884	+		PP_5590	0.57	-0.6
3,631,885	-				-0.9
3,631,885	-		PP_5590	0.57	+2.4
3,631,980	+		PP_5590	0.64	+0.1
3,632,040	+		PP_5590	0.68	-1.2
3,632,040	+		PP_5590	0.68	+0.3
3,632,040	+		PP_5590	0.68	+0.8
3,632,040	+		PP_5590	0.68	+0.1
3,632,041	-		PP_5590	0.68	-1.2
3,632,041	-		PP_5590	0.68	-1.2
3,632,041	-		PP_5590	0.68	+0.4
3,632,049	+		PP_5590	0.69	+0.0
3,632,049	+		PP_5590	0.69	+0.6