Strain Fitness in Pseudomonas putida KT2440 around PP_3199

Experiment: R2A with Fusaric 480 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 480 ug/mL
3,627,259	+		PP_3197	0.51	+0.8
3,627,259	+		PP_3197	0.51	-0.1
3,627,441	+		PP_3197	0.70	+0.6
3,627,839	+		PP_3198	0.31	+0.5
3,627,934	+		PP_3198	0.59	-0.2
3,627,934	+				-0.7
3,627,935	-		PP_3198	0.60	+0.6
3,628,043	+				+0.5
3,628,044	-				+0.5
3,628,146	+				+1.8
3,628,216	+				-2.9
3,628,216	+				+0.5
3,628,217	-				-0.5
3,628,335	-		PP_3199	0.11	-1.5
3,628,403	+		PP_3199	0.17	-3.7
3,628,442	+		PP_3199	0.21	-0.5
3,628,442	+		PP_3199	0.21	-1.0
3,628,443	-		PP_3199	0.21	-1.9
3,628,443	-		PP_3199	0.21	-1.5
3,628,443	-		PP_3199	0.21	-1.6
3,628,665	-		PP_3199	0.40	-0.9
3,628,808	+		PP_3199	0.53	+0.8
3,628,809	-		PP_3199	0.53	+0.4
3,628,809	-		PP_3199	0.53	+0.2
3,628,862	+		PP_3199	0.58	-0.9
3,628,862	+		PP_3199	0.58	+0.1
3,629,566	-		PP_3200	0.11	+0.8
3,629,592	+		PP_3200	0.12	-1.2
3,629,715	+		PP_3200	0.20	-1.2
3,629,715	+		PP_3200	0.20	-1.1
3,629,715	+		PP_3200	0.20	-2.0
3,629,716	-		PP_3200	0.20	-1.4
3,629,716	-		PP_3200	0.20	+0.2
3,629,719	+				-0.5
3,629,719	+		PP_3200	0.20	+0.3
3,629,719	+		PP_3200	0.20	+0.9
3,629,719	+		PP_3200	0.20	+0.4
3,629,720	-		PP_3200	0.20	+0.5
3,629,720	-		PP_3200	0.20	-1.8
3,629,720	-		PP_3200	0.20	-0.5
3,629,770	+		PP_3200	0.23	-1.3
3,629,770	+		PP_3200	0.23	-0.1
3,629,816	-		PP_3200	0.25	-0.9
3,629,816	-		PP_3200	0.25	-0.3
3,629,892	+		PP_3200	0.30	-0.9
3,629,893	-		PP_3200	0.30	-0.6
3,629,893	-		PP_3200	0.30	+0.9
3,629,948	-		PP_3200	0.33	-1.3
3,630,128	-		PP_3200	0.44	-0.4
3,630,128	-		PP_3200	0.44	+0.3
3,630,130	+		PP_3200	0.44	-1.2
3,630,131	-				+0.3
3,630,131	-		PP_3200	0.44	-2.8
3,630,131	-		PP_3200	0.44	-0.7
3,630,171	+		PP_3200	0.46	-1.8
3,630,175	+		PP_3200	0.46	-0.7
3,630,175	+		PP_3200	0.46	-3.8
3,630,175	+		PP_3200	0.46	-0.0