Strain Fitness in Pseudomonas putida KT2440 around PP_2741

Experiment: R2A with Fusaric 480 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_2740 and PP_2741 are separated by 161 nucleotidesPP_2741 and PP_2742 are separated by 67 nucleotidesPP_2742 and PP_2743 overlap by 4 nucleotides PP_2740: PP_2740 - Transcriptional regulator, MerR family, at 3,122,566 to 3,123,453 _2740 PP_2741: PP_2741 - conserved membrane protein of unknown function, at 3,123,615 to 3,125,252 _2741 PP_2742: PP_2742 - conserved protein of unknown function, at 3,125,320 to 3,125,679 _2742 PP_2743: PP_2743 - Acetyltransferase, GNAT family, at 3,125,676 to 3,126,269 _2743 Position (kb) 3123 3124 3125 3126Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3122.985 kb on + strand, within PP_2740at 3123.025 kb on - strand, within PP_2740at 3123.378 kb on - strandat 3123.724 kb on + strandat 3123.855 kb on + strand, within PP_2741at 3123.943 kb on + strand, within PP_2741at 3123.973 kb on + strand, within PP_2741at 3123.974 kb on - strand, within PP_2741at 3123.992 kb on + strand, within PP_2741at 3123.993 kb on - strand, within PP_2741at 3124.000 kb on + strand, within PP_2741at 3124.000 kb on + strand, within PP_2741at 3124.126 kb on - strand, within PP_2741at 3124.157 kb on - strand, within PP_2741at 3124.161 kb on - strand, within PP_2741at 3124.161 kb on - strand, within PP_2741at 3124.273 kb on + strand, within PP_2741at 3124.273 kb on + strand, within PP_2741at 3124.279 kb on + strand, within PP_2741at 3124.280 kb on - strand, within PP_2741at 3124.515 kb on - strand, within PP_2741at 3124.580 kb on - strand, within PP_2741at 3124.606 kb on + strand, within PP_2741at 3124.639 kb on + strand, within PP_2741at 3124.640 kb on - strand, within PP_2741at 3124.755 kb on + strand, within PP_2741at 3124.895 kb on + strand, within PP_2741at 3124.895 kb on + strand, within PP_2741at 3124.895 kb on + strand, within PP_2741at 3124.895 kb on + strand, within PP_2741at 3124.896 kb on - strand, within PP_2741at 3124.896 kb on - strand, within PP_2741at 3124.896 kb on - strand, within PP_2741at 3124.977 kb on - strand, within PP_2741at 3125.145 kb on + strandat 3125.145 kb on + strandat 3125.209 kb on - strandat 3125.284 kb on + strandat 3125.285 kb on - strandat 3125.292 kb on + strandat 3125.292 kb on + strandat 3125.368 kb on + strand, within PP_2742at 3125.498 kb on + strand, within PP_2742at 3125.498 kb on + strand, within PP_2742at 3125.498 kb on + strand, within PP_2742at 3125.567 kb on + strand, within PP_2742at 3125.570 kb on + strand, within PP_2742at 3125.571 kb on - strand, within PP_2742at 3125.605 kb on + strand, within PP_2742at 3125.606 kb on - strand, within PP_2742at 3125.606 kb on - strand, within PP_2742at 3125.713 kb on + strandat 3125.714 kb on - strandat 3125.718 kb on + strandat 3125.718 kb on + strandat 3125.719 kb on - strandat 3125.719 kb on - strandat 3125.722 kb on + strandat 3125.722 kb on + strandat 3125.723 kb on - strandat 3125.830 kb on + strand, within PP_2743at 3125.844 kb on + strand, within PP_2743at 3125.845 kb on - strand, within PP_2743at 3125.845 kb on - strand, within PP_2743at 3125.845 kb on - strand, within PP_2743at 3125.946 kb on + strand, within PP_2743at 3125.947 kb on - strand, within PP_2743at 3125.947 kb on - strand, within PP_2743at 3125.947 kb on - strand, within PP_2743at 3125.947 kb on - strand, within PP_2743at 3125.947 kb on - strand, within PP_2743at 3125.950 kb on + strand, within PP_2743at 3125.950 kb on + strand, within PP_2743at 3125.950 kb on + strand, within PP_2743at 3125.950 kb on + strand, within PP_2743at 3125.950 kb on + strand, within PP_2743at 3125.951 kb on - strand, within PP_2743at 3125.951 kb on - strand, within PP_2743at 3125.951 kb on - strand, within PP_2743at 3125.951 kb on - strand, within PP_2743at 3125.951 kb on - strand, within PP_2743at 3125.951 kb on - strand, within PP_2743at 3125.951 kb on - strand, within PP_2743at 3125.951 kb on - strand, within PP_2743at 3125.965 kb on - strand, within PP_2743at 3125.965 kb on - strand, within PP_2743at 3125.980 kb on + strand, within PP_2743at 3126.037 kb on + strand, within PP_2743at 3126.037 kb on + strand, within PP_2743at 3126.037 kb on + strand, within PP_2743at 3126.037 kb on + strand, within PP_2743at 3126.037 kb on + strand, within PP_2743at 3126.037 kb on + strand, within PP_2743at 3126.038 kb on - strand, within PP_2743at 3126.038 kb on - strand, within PP_2743at 3126.038 kb on - strand, within PP_2743at 3126.038 kb on - strand, within PP_2743at 3126.038 kb on - strand, within PP_2743at 3126.038 kb on - strand, within PP_2743at 3126.038 kb on - strand, within PP_2743at 3126.041 kb on + strand, within PP_2743at 3126.041 kb on + strand, within PP_2743at 3126.041 kb on + strand, within PP_2743at 3126.041 kb on + strand, within PP_2743at 3126.041 kb on + strand, within PP_2743at 3126.041 kb on + strand, within PP_2743at 3126.041 kb on + strand, within PP_2743at 3126.042 kb on - strand, within PP_2743at 3126.042 kb on - strand, within PP_2743at 3126.042 kb on - strand, within PP_2743at 3126.042 kb on - strand, within PP_2743at 3126.042 kb on - strand, within PP_2743at 3126.042 kb on - strand, within PP_2743at 3126.042 kb on - strand, within PP_2743at 3126.042 kb on - strand, within PP_2743at 3126.042 kb on - strand, within PP_2743at 3126.042 kb on - strand, within PP_2743at 3126.177 kb on + strand, within PP_2743at 3126.177 kb on + strand, within PP_2743at 3126.177 kb on + strand, within PP_2743at 3126.178 kb on - strand, within PP_2743at 3126.178 kb on - strand, within PP_2743at 3126.181 kb on + strand, within PP_2743at 3126.182 kb on - strand, within PP_2743

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Fusaric 480 ug/mL
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3,122,985 + PP_2740 0.47 +1.0
3,123,025 - PP_2740 0.52 +0.9
3,123,378 - -0.2
3,123,724 + -0.1
3,123,855 + PP_2741 0.15 +0.1
3,123,943 + PP_2741 0.20 -1.1
3,123,973 + PP_2741 0.22 -2.8
3,123,974 - PP_2741 0.22 -0.8
3,123,992 + PP_2741 0.23 -1.0
3,123,993 - PP_2741 0.23 -2.1
3,124,000 + PP_2741 0.24 -0.1
3,124,000 + PP_2741 0.24 -1.2
3,124,126 - PP_2741 0.31 +0.3
3,124,157 - PP_2741 0.33 -0.3
3,124,161 - PP_2741 0.33 +0.0
3,124,161 - PP_2741 0.33 +0.2
3,124,273 + PP_2741 0.40 -2.7
3,124,273 + PP_2741 0.40 +0.7
3,124,279 + PP_2741 0.41 -0.4
3,124,280 - PP_2741 0.41 +0.0
3,124,515 - PP_2741 0.55 -0.4
3,124,580 - PP_2741 0.59 -0.0
3,124,606 + PP_2741 0.61 -0.4
3,124,639 + PP_2741 0.63 +0.3
3,124,640 - PP_2741 0.63 -1.0
3,124,755 + PP_2741 0.70 +0.0
3,124,895 + PP_2741 0.78 -2.0
3,124,895 + PP_2741 0.78 -1.5
3,124,895 + PP_2741 0.78 -0.4
3,124,895 + PP_2741 0.78 -0.2
3,124,896 - PP_2741 0.78 -1.4
3,124,896 - PP_2741 0.78 -0.3
3,124,896 - PP_2741 0.78 +0.3
3,124,977 - PP_2741 0.83 +0.5
3,125,145 + +0.3
3,125,145 + +0.9
3,125,209 - -1.6
3,125,284 + -0.8
3,125,285 - -0.5
3,125,292 + -0.1
3,125,292 + -2.5
3,125,368 + PP_2742 0.13 -0.7
3,125,498 + PP_2742 0.49 -0.2
3,125,498 + PP_2742 0.49 -0.1
3,125,498 + PP_2742 0.49 +1.4
3,125,567 + PP_2742 0.69 -0.1
3,125,570 + PP_2742 0.69 +0.3
3,125,571 - PP_2742 0.70 -1.6
3,125,605 + PP_2742 0.79 +0.1
3,125,606 - PP_2742 0.79 +0.4
3,125,606 - PP_2742 0.79 -4.1
3,125,713 + +0.0
3,125,714 - -1.5
3,125,718 + -0.1
3,125,718 + +0.0
3,125,719 - -0.7
3,125,719 - -0.2
3,125,722 + -0.5
3,125,722 + -0.7
3,125,723 - +0.5
3,125,830 + PP_2743 0.26 +0.2
3,125,844 + PP_2743 0.28 -0.8
3,125,845 - PP_2743 0.28 -0.6
3,125,845 - PP_2743 0.28 +1.1
3,125,845 - PP_2743 0.28 -0.6
3,125,946 + PP_2743 0.45 -0.6
3,125,947 - PP_2743 0.46 -0.4
3,125,947 - PP_2743 0.46 +0.9
3,125,947 - PP_2743 0.46 +1.2
3,125,947 - PP_2743 0.46 +0.0
3,125,947 - PP_2743 0.46 +0.6
3,125,950 + PP_2743 0.46 -0.8
3,125,950 + PP_2743 0.46 +0.4
3,125,950 + PP_2743 0.46 -3.9
3,125,950 + PP_2743 0.46 -0.9
3,125,950 + PP_2743 0.46 +0.4
3,125,951 - PP_2743 0.46 -0.4
3,125,951 - PP_2743 0.46 -0.7
3,125,951 - PP_2743 0.46 +0.8
3,125,951 - PP_2743 0.46 +1.0
3,125,951 - PP_2743 0.46 -0.9
3,125,951 - PP_2743 0.46 -1.2
3,125,951 - PP_2743 0.46 +1.6
3,125,951 - PP_2743 0.46 +0.3
3,125,965 - PP_2743 0.49 -1.3
3,125,965 - PP_2743 0.49 -0.2
3,125,980 + PP_2743 0.51 +1.2
3,126,037 + PP_2743 0.61 +1.3
3,126,037 + PP_2743 0.61 -0.7
3,126,037 + PP_2743 0.61 +0.1
3,126,037 + PP_2743 0.61 -1.3
3,126,037 + PP_2743 0.61 +0.6
3,126,037 + PP_2743 0.61 +1.1
3,126,038 - PP_2743 0.61 -0.5
3,126,038 - PP_2743 0.61 -0.7
3,126,038 - PP_2743 0.61 -0.5
3,126,038 - PP_2743 0.61 -0.1
3,126,038 - PP_2743 0.61 +1.3
3,126,038 - PP_2743 0.61 +0.4
3,126,038 - PP_2743 0.61 +0.1
3,126,041 + PP_2743 0.61 -2.2
3,126,041 + PP_2743 0.61 -2.5
3,126,041 + PP_2743 0.61 -0.7
3,126,041 + PP_2743 0.61 +0.2
3,126,041 + PP_2743 0.61 +1.6
3,126,041 + PP_2743 0.61 -3.1
3,126,041 + PP_2743 0.61 +0.2
3,126,042 - PP_2743 0.62 -0.7
3,126,042 - PP_2743 0.62 -0.5
3,126,042 - PP_2743 0.62 +0.4
3,126,042 - PP_2743 0.62 +0.2
3,126,042 - PP_2743 0.62 +0.1
3,126,042 - PP_2743 0.62 -0.0
3,126,042 - PP_2743 0.62 +0.9
3,126,042 - PP_2743 0.62 -1.1
3,126,042 - PP_2743 0.62 +0.3
3,126,042 - PP_2743 0.62 -1.0
3,126,177 + PP_2743 0.84 +0.7
3,126,177 + PP_2743 0.84 +0.3
3,126,177 + PP_2743 0.84 +0.4
3,126,178 - PP_2743 0.85 +1.2
3,126,178 - PP_2743 0.85 +0.1
3,126,181 + PP_2743 0.85 -2.6
3,126,182 - PP_2743 0.85 -0.8

Or see this region's nucleotide sequence