Strain Fitness in Pseudomonas putida KT2440 around PP_2557

Experiment: R2A with Fusaric 480 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 480 ug/mL
2,903,954	+		PP_2556	0.28	-0.3
2,903,954	+		PP_2556	0.28	-0.2
2,903,955	-		PP_2556	0.28	+0.6
2,904,059	+		PP_2556	0.36	+0.4
2,904,059	+		PP_2556	0.36	+0.3
2,904,080	+		PP_2556	0.37	-0.4
2,904,081	-				+1.9
2,904,081	-		PP_2556	0.37	-0.4
2,904,086	+		PP_2556	0.38	+0.2
2,904,087	-		PP_2556	0.38	-0.4
2,904,378	-				-1.0
2,904,466	+		PP_2556	0.66	-3.0
2,904,467	-		PP_2556	0.66	+0.0
2,904,591	-		PP_2556	0.75	+0.7
2,904,690	-				-0.8
2,904,734	+		PP_2556	0.86	+0.8
2,904,734	+		PP_2556	0.86	-0.1
2,904,734	+		PP_2556	0.86	+0.4
2,904,734	+		PP_2556	0.86	+0.4
2,904,980	-				+0.9
2,905,006	-				+0.4
2,905,006	-				-1.7
2,905,006	-				-1.2
2,905,052	+		PP_2557	0.12	-0.4
2,905,125	+				+1.8
2,905,126	+		PP_2557	0.21	-0.0
2,905,126	-		PP_2557	0.21	-0.3
2,905,126	-		PP_2557	0.21	-1.5
2,905,219	-		PP_2557	0.32	-0.7
2,905,310	+		PP_2557	0.42	-0.1
2,905,559	-		PP_2557	0.71	-1.5
2,905,559	-		PP_2557	0.71	-3.5
2,905,559	-		PP_2557	0.71	-0.5
2,905,559	-		PP_2557	0.71	-1.1
2,905,645	+		PP_2557	0.81	+0.3
2,905,749	+				-0.0
2,905,842	+				+0.7
2,905,842	+				-0.9
2,905,842	+				+1.5
2,905,843	-				+1.4
2,905,979	+				+0.4
2,906,008	+				-1.7
2,906,009	-				-0.3
2,906,009	-				+0.3
2,906,023	-				-0.0
2,906,036	+				+0.4
2,906,056	-				+0.0
2,906,056	-				-1.0
2,906,074	+				-1.1
2,906,074	+				+1.3
2,906,075	-				-3.5
2,906,130	+				+0.6
2,906,130	+				+2.7
2,906,169	+		PP_2558	0.11	+0.9
2,906,170	-		PP_2558	0.11	-0.1
2,906,170	-		PP_2558	0.11	+0.6
2,906,170	-		PP_2558	0.11	-0.0
2,906,212	+		PP_2558	0.14	-0.5
2,906,213	-		PP_2558	0.14	-0.7
2,906,213	-		PP_2558	0.14	+1.4
2,906,434	-		PP_2558	0.30	+0.8
2,906,592	+		PP_2558	0.42	+0.9
2,906,592	+		PP_2558	0.42	+0.6
2,906,592	+		PP_2558	0.42	+0.6
2,906,592	+		PP_2558	0.42	-0.6
2,906,593	-		PP_2558	0.42	+0.1
2,906,730	+		PP_2558	0.52	-2.2
2,906,730	+				+1.5
2,906,731	-		PP_2558	0.52	+0.3
2,906,731	-		PP_2558	0.52	-0.6
2,906,731	-		PP_2558	0.52	-0.9