Strain Fitness in Pseudomonas putida KT2440 around PP_1861

Experiment: R2A with Fusaric 480 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 480 ug/mL
2,081,604	-				-0.5
2,081,638	+				-1.8
2,081,638	+				+0.3
2,081,638	+				+0.6
2,081,638	+				+2.4
2,081,760	+				-0.5
2,081,761	-				-1.4
2,081,916	+		PP_1860	0.33	+0.4
2,081,916	+		PP_1860	0.33	-0.6
2,081,917	-		PP_1860	0.33	-1.1
2,081,917	-		PP_1860	0.33	-1.4
2,081,925	+		PP_1860	0.35	-0.2
2,082,082	+		PP_1860	0.69	-4.0
2,082,082	+		PP_1860	0.69	+1.0
2,082,083	-		PP_1860	0.70	+0.6
2,082,124	+		PP_1860	0.79	-1.0
2,082,125	-		PP_1860	0.79	-0.3
2,082,281	+				+0.8
2,082,282	-				+0.2
2,082,394	+		PP_1861	0.12	+0.8
2,082,401	+		PP_1861	0.13	-0.1
2,082,473	+		PP_1861	0.20	-0.2
2,082,474	-		PP_1861	0.20	-0.1
2,082,505	+		PP_1861	0.24	-0.6
2,082,505	+		PP_1861	0.24	-0.9
2,082,505	+		PP_1861	0.24	-2.8
2,082,506	-		PP_1861	0.24	-1.1
2,082,506	-		PP_1861	0.24	-0.2
2,082,506	-		PP_1861	0.24	-2.2
2,082,506	-		PP_1861	0.24	+0.4
2,082,506	-		PP_1861	0.24	-1.0
2,082,507	+		PP_1861	0.24	-0.0
2,082,507	+		PP_1861	0.24	-0.8
2,082,705	-		PP_1861	0.45	+0.2
2,082,737	+		PP_1861	0.48	-0.7
2,082,737	+		PP_1861	0.48	+0.1
2,082,738	-		PP_1861	0.48	-0.1
2,082,738	-		PP_1861	0.48	-1.7
2,082,738	-		PP_1861	0.48	-3.3
2,083,210	+				-0.8
2,083,307	+				+0.9
2,083,365	+				+0.1
2,083,365	+				-0.2
2,083,365	+				-0.7
2,083,366	-				-2.4
2,083,366	-				+0.2
2,083,366	-				-0.9
2,083,366	-				+0.3
2,083,367	+				-0.6
2,083,820	-		PP_1862	0.63	+1.2
2,083,820	-		PP_1862	0.63	+0.6
2,083,853	+		PP_1862	0.67	-1.4
2,083,901	+		PP_1862	0.74	-1.9
2,083,924	-		PP_1862	0.77	-0.9
2,084,033	-				+0.6
2,084,187	+				-0.9
2,084,187	+				-1.4
2,084,188	-				-0.1
2,084,203	+				-0.7
2,084,203	+				+0.3
2,084,204	-				-1.3
2,084,204	-				-3.2
2,084,204	-				-1.0
2,084,204	-				+0.1