Strain Fitness in Pseudomonas putida KT2440 around PP_0962

Experiment: R2A with Fusaric 480 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 480 ug/mL
1,101,751	-		PP_0960	0.68	-3.2
1,101,899	+				-1.3
1,101,903	+				-0.2
1,101,903	+				+0.6
1,101,903	+				-0.4
1,101,903	+				-1.9
1,101,904	-				-1.2
1,101,910	+				-3.0
1,101,910	+				-0.7
1,101,910	+				-3.1
1,101,911	-				-2.8
1,101,911	-				-3.2
1,102,056	+		PP_0961	0.22	-3.9
1,102,057	-		PP_0961	0.22	-3.4
1,102,080	+		PP_0961	0.25	-0.9
1,102,080	+		PP_0961	0.25	-3.7
1,102,081	-		PP_0961	0.26	-0.9
1,102,081	-		PP_0961	0.26	-3.1
1,102,081	-		PP_0961	0.26	-3.2
1,102,155	+		PP_0961	0.37	-2.2
1,102,156	-		PP_0961	0.37	-2.7
1,102,227	+		PP_0961	0.48	-2.1
1,102,228	-		PP_0961	0.48	-3.5
1,102,228	-		PP_0961	0.48	-3.1
1,102,228	-		PP_0961	0.48	-1.9
1,102,248	+		PP_0961	0.51	-3.5
1,102,249	-		PP_0961	0.52	-3.6
1,102,249	-		PP_0961	0.52	-3.0
1,102,249	-		PP_0961	0.52	-1.5
1,102,253	+		PP_0961	0.52	-2.0
1,102,253	+		PP_0961	0.52	-2.1
1,102,254	-		PP_0961	0.52	-4.3
1,102,281	-		PP_0961	0.56	-1.7
1,102,356	+		PP_0961	0.68	-3.7
1,102,356	+		PP_0961	0.68	-2.5
1,102,356	+		PP_0961	0.68	-1.9
1,102,357	-		PP_0961	0.68	-0.5
1,102,394	+		PP_0961	0.74	-1.8
1,102,395	-		PP_0961	0.74	-1.0
1,102,575	+				+0.5
1,102,575	+				-1.2
1,102,575	+				-0.2
1,102,575	+				-2.5
1,102,575	+				-1.0
1,102,576	-				-4.0
1,102,576	-				-2.7
1,102,623	-		PP_0962	0.21	-2.3
1,102,741	-		PP_0962	0.60	-0.7
1,102,751	+		PP_0962	0.63	-3.7
1,102,751	+		PP_0962	0.63	-4.0
1,102,810	+		PP_0962	0.83	-2.3
1,102,810	+		PP_0962	0.83	-3.5
1,102,832	+				-4.3
1,102,832	+				-3.1
1,102,832	+				-2.1
1,102,833	-				-1.1
1,102,833	-				-2.3
1,102,833	-				+0.5
1,102,833	-				-2.8
1,102,859	+				-0.7
1,102,859	+				-0.1
1,102,860	-				-4.1
1,102,860	-				-3.7
1,102,934	+				+1.9
1,102,989	+				-2.4
1,102,989	+				-2.9
1,102,996	+				-0.2
1,103,126	+		PP_0963	0.61	+0.2
1,103,126	+		PP_0963	0.61	-0.1
1,103,126	+				+1.3
1,103,126	+		PP_0963	0.61	-0.4
1,103,126	+		PP_0963	0.61	-2.3
1,103,172	+		PP_0963	0.80	-2.2