Strain Fitness in Pseudomonas putida KT2440 around PP_0866

Experiment: R2A with Fusaric 480 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 480 ug/mL
1,003,018	+				+0.1
1,003,018	+				-1.5
1,003,073	+				+0.8
1,003,074	-				-0.1
1,003,123	-				-0.9
1,003,355	+				-0.0
1,003,355	+				-4.0
1,003,356	-				-0.4
1,003,356	-				+0.6
1,003,360	-				-0.6
1,003,386	+				+1.0
1,003,387	-				+0.8
1,003,468	-				+0.2
1,003,524	+				+2.6
1,003,525	-				-1.9
1,003,525	-				+0.5
1,003,674	-		PP_0865	0.37	-0.2
1,003,674	-		PP_0865	0.37	+0.7
1,003,770	+		PP_0865	0.57	-0.5
1,003,770	+		PP_0865	0.57	-0.3
1,003,770	+		PP_0865	0.57	+0.5
1,003,771	-		PP_0865	0.57	-2.7
1,003,927	-		PP_0865	0.89	-1.4
1,003,927	-		PP_0865	0.89	+0.0
1,003,928	+		PP_0865	0.89	-0.0
1,003,928	+		PP_0865	0.89	+0.6
1,003,929	-		PP_0865	0.90	-0.9
1,003,929	-		PP_0865	0.90	-0.3
1,004,138	+		PP_0866	0.16	-0.0
1,004,138	+		PP_0866	0.16	-0.4
1,004,138	+		PP_0866	0.16	-0.6
1,004,497	+		PP_0866	0.53	-2.0
1,004,668	+		PP_0866	0.70	+1.4
1,004,668	+		PP_0866	0.70	-0.3
1,004,668	+		PP_0866	0.70	+0.4
1,004,668	+		PP_0866	0.70	-1.5
1,004,669	-		PP_0866	0.70	-0.8
1,004,669	-		PP_0866	0.70	-0.6
1,004,670	+		PP_0866	0.70	+0.5
1,004,670	+		PP_0866	0.70	+0.0
1,004,670	+		PP_0866	0.70	-1.5
1,004,670	+		PP_0866	0.70	-0.2
1,004,670	+		PP_0866	0.70	-0.4
1,004,670	+		PP_0866	0.70	-4.1
1,004,670	+		PP_0866	0.70	+0.7
1,004,670	+		PP_0866	0.70	-0.1
1,004,670	+		PP_0866	0.70	-1.6
1,004,670	+		PP_0866	0.70	+0.3
1,004,670	+		PP_0866	0.70	+0.1
1,004,671	-		PP_0866	0.70	-1.5
1,004,671	-		PP_0866	0.70	-0.3
1,004,671	-		PP_0866	0.70	-1.0
1,004,671	-		PP_0866	0.70	-0.4
1,004,671	-		PP_0866	0.70	-0.6
1,004,671	-		PP_0866	0.70	+0.5
1,004,671	-		PP_0866	0.70	+0.4
1,004,671	-		PP_0866	0.70	+0.5
1,004,671	-		PP_0866	0.70	-1.0
1,004,671	-		PP_0866	0.70	+0.0
1,004,699	+		PP_0866	0.73	-0.4
1,004,700	-		PP_0866	0.73	-1.3
1,004,775	+		PP_0866	0.81	-1.0
1,004,775	+		PP_0866	0.81	-0.4
1,004,776	-		PP_0866	0.81	-0.1
1,004,776	-		PP_0866	0.81	+0.8
1,004,776	-		PP_0866	0.81	-0.5
1,004,863	+		PP_0866	0.90	+0.1
1,004,872	+				+0.7
1,004,872	+				-0.6
1,004,949	+				+0.4
1,005,169	+				-1.4
1,005,391	+		PP_0867	0.13	+0.9
1,005,483	+		PP_0867	0.17	+1.6
1,005,513	+		PP_0867	0.18	-2.3
1,005,513	+		PP_0867	0.18	+0.1
1,005,639	+		PP_0867	0.23	+0.6
1,005,650	-		PP_0867	0.24	+0.0
1,005,713	+		PP_0867	0.26	-2.3
1,005,713	+		PP_0867	0.26	-0.4