Strain Fitness in Pseudomonas putida KT2440 around PP_0689

Experiment: R2A with Fusaric 480 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0687 and PP_0688 are separated by 46 nucleotidesPP_0688 and PP_0689 are separated by 38 nucleotidesPP_0689 and PP_0690 are separated by 188 nucleotides PP_0687: PP_0687 - octaprenyl diphosphate synthase, at 799,504 to 800,472 _0687 PP_0688: PP_0688 - 50S ribosomal protein L21, at 800,519 to 801,031 _0688 PP_0689: PP_0689 - 50S ribosomal protein L27, at 801,070 to 801,327 _0689 PP_0690: PP_0690 - GTPase Obg, at 801,516 to 802,742 _0690 Position (kb) 801 802Strain fitness (log2 ratio) -1 0 1at 801.427 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Fusaric 480 ug/mL
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801,427 + -0.1

Or see this region's nucleotide sequence