Strain Fitness in Pseudomonas putida KT2440 around PP_0321

Experiment: R2A with Fusaric 480 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0320 and PP_0321 are separated by 34 nucleotidesPP_0321 and PP_0322 are separated by 325 nucleotides PP_0320: PP_0320 - Methyl-accepting chemotaxis transducer, at 383,523 to 385,460 _0320 PP_0321: PP_0321 - low specificity L-threonine aldolase, at 385,495 to 386,535 _0321 PP_0322: PP_0322 - serine hydroxymethyltransferase, at 386,861 to 388,114 _0322 Position (kb) 385 386 387Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 384.638 kb on + strand, within PP_0320at 385.072 kb on + strand, within PP_0320at 385.072 kb on + strand, within PP_0320at 385.072 kb on + strand, within PP_0320at 385.072 kb on + strand, within PP_0320at 385.072 kb on + strand, within PP_0320at 385.072 kb on + strand, within PP_0320at 385.073 kb on - strand, within PP_0320at 385.073 kb on - strand, within PP_0320at 385.073 kb on - strand, within PP_0320at 385.073 kb on - strand, within PP_0320at 385.073 kb on - strand, within PP_0320at 385.073 kb on - strand, within PP_0320at 385.076 kb on + strand, within PP_0320at 385.076 kb on + strand, within PP_0320at 385.076 kb on + strand, within PP_0320at 385.076 kb on + strand, within PP_0320at 385.076 kb on + strand, within PP_0320at 385.076 kb on + strand, within PP_0320at 385.077 kb on - strand, within PP_0320at 385.077 kb on - strand, within PP_0320at 385.141 kb on + strand, within PP_0320at 385.141 kb on + strand, within PP_0320at 385.142 kb on - strand, within PP_0320at 385.142 kb on - strand, within PP_0320at 385.142 kb on - strand, within PP_0320at 385.231 kb on + strandat 385.459 kb on - strandat 385.459 kb on - strandat 385.599 kb on + strand, within PP_0321at 385.600 kb on - strand, within PP_0321at 385.601 kb on + strand, within PP_0321at 385.602 kb on - strand, within PP_0321at 385.602 kb on - strand, within PP_0321at 385.602 kb on - strand, within PP_0321at 385.602 kb on - strand, within PP_0321at 385.602 kb on - strand, within PP_0321at 385.762 kb on + strand, within PP_0321at 386.002 kb on - strand, within PP_0321at 386.002 kb on - strand, within PP_0321at 386.136 kb on - strand, within PP_0321at 386.143 kb on - strand, within PP_0321at 386.300 kb on + strand, within PP_0321at 386.300 kb on + strand, within PP_0321at 386.397 kb on - strand, within PP_0321at 386.432 kb on + strandat 386.498 kb on + strandat 386.499 kb on - strandat 386.499 kb on - strandat 386.571 kb on - strandat 386.595 kb on - strandat 386.597 kb on - strandat 386.597 kb on - strandat 386.624 kb on + strandat 386.625 kb on - strandat 386.689 kb on - strandat 386.745 kb on - strandat 386.745 kb on - strandat 386.745 kb on - strandat 386.745 kb on - strandat 386.797 kb on + strandat 386.797 kb on + strandat 386.798 kb on - strandat 386.856 kb on - strandat 386.856 kb on - strandat 386.856 kb on - strandat 386.972 kb on + strandat 386.973 kb on - strandat 386.973 kb on - strandat 387.023 kb on + strand, within PP_0322at 387.024 kb on - strand, within PP_0322at 387.024 kb on - strand, within PP_0322at 387.051 kb on - strand, within PP_0322at 387.051 kb on - strand, within PP_0322at 387.053 kb on + strand, within PP_0322at 387.053 kb on + strand, within PP_0322at 387.053 kb on + strand, within PP_0322at 387.053 kb on + strand, within PP_0322at 387.053 kb on + strand, within PP_0322at 387.072 kb on + strand, within PP_0322at 387.072 kb on + strand, within PP_0322at 387.072 kb on + strand, within PP_0322at 387.073 kb on - strand, within PP_0322at 387.073 kb on - strand, within PP_0322at 387.081 kb on + strand, within PP_0322at 387.082 kb on - strand, within PP_0322at 387.082 kb on - strand, within PP_0322at 387.082 kb on - strand, within PP_0322at 387.129 kb on - strand, within PP_0322at 387.176 kb on + strand, within PP_0322at 387.278 kb on + strand, within PP_0322at 387.279 kb on - strand, within PP_0322at 387.392 kb on + strand, within PP_0322at 387.393 kb on - strand, within PP_0322

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Fusaric 480 ug/mL
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384,638 + PP_0320 0.58 -0.5
385,072 + PP_0320 0.80 -0.0
385,072 + PP_0320 0.80 +0.4
385,072 + PP_0320 0.80 -0.3
385,072 + PP_0320 0.80 -0.4
385,072 + PP_0320 0.80 -0.6
385,072 + PP_0320 0.80 -0.7
385,073 - PP_0320 0.80 -0.7
385,073 - PP_0320 0.80 -0.9
385,073 - PP_0320 0.80 -1.5
385,073 - PP_0320 0.80 -0.3
385,073 - PP_0320 0.80 -0.2
385,073 - PP_0320 0.80 +0.6
385,076 + PP_0320 0.80 -0.4
385,076 + PP_0320 0.80 -0.2
385,076 + PP_0320 0.80 +0.6
385,076 + PP_0320 0.80 -0.4
385,076 + PP_0320 0.80 +1.1
385,076 + PP_0320 0.80 +0.0
385,077 - PP_0320 0.80 +0.4
385,077 - PP_0320 0.80 -0.1
385,141 + PP_0320 0.83 +0.3
385,141 + PP_0320 0.83 -0.3
385,142 - PP_0320 0.84 -0.5
385,142 - PP_0320 0.84 -1.8
385,142 - PP_0320 0.84 +0.9
385,231 + +1.8
385,459 - -0.6
385,459 - -0.5
385,599 + PP_0321 0.10 +0.2
385,600 - PP_0321 0.10 +1.4
385,601 + PP_0321 0.10 -0.1
385,602 - PP_0321 0.10 -0.4
385,602 - PP_0321 0.10 +2.1
385,602 - PP_0321 0.10 +0.0
385,602 - PP_0321 0.10 -2.8
385,602 - PP_0321 0.10 +0.2
385,762 + PP_0321 0.26 +0.2
386,002 - PP_0321 0.49 +0.4
386,002 - PP_0321 0.49 -2.7
386,136 - PP_0321 0.62 +0.2
386,143 - PP_0321 0.62 +0.8
386,300 + PP_0321 0.77 +0.3
386,300 + PP_0321 0.77 -0.1
386,397 - PP_0321 0.87 +0.4
386,432 + -0.3
386,498 + +0.4
386,499 - +1.4
386,499 - +0.6
386,571 - -1.6
386,595 - +0.0
386,597 - -0.9
386,597 - +0.5
386,624 + -0.8
386,625 - -0.6
386,689 - +1.0
386,745 - +1.6
386,745 - +0.7
386,745 - +0.5
386,745 - -0.9
386,797 + -0.1
386,797 + -1.2
386,798 - -1.7
386,856 - -0.6
386,856 - +0.8
386,856 - -0.1
386,972 + +0.3
386,973 - +0.8
386,973 - -0.2
387,023 + PP_0322 0.13 +0.8
387,024 - PP_0322 0.13 +0.0
387,024 - PP_0322 0.13 -1.8
387,051 - PP_0322 0.15 +0.2
387,051 - PP_0322 0.15 +0.1
387,053 + PP_0322 0.15 -0.2
387,053 + PP_0322 0.15 -0.4
387,053 + PP_0322 0.15 +0.8
387,053 + PP_0322 0.15 +2.3
387,053 + PP_0322 0.15 -0.1
387,072 + PP_0322 0.17 -0.8
387,072 + PP_0322 0.17 -0.1
387,072 + PP_0322 0.17 +0.6
387,073 - PP_0322 0.17 +0.4
387,073 - PP_0322 0.17 -1.9
387,081 + PP_0322 0.18 -0.9
387,082 - PP_0322 0.18 +2.0
387,082 - PP_0322 0.18 +0.7
387,082 - PP_0322 0.18 -0.0
387,129 - PP_0322 0.21 -0.5
387,176 + PP_0322 0.25 +0.0
387,278 + PP_0322 0.33 +1.0
387,279 - PP_0322 0.33 +0.5
387,392 + PP_0322 0.42 +2.0
387,393 - PP_0322 0.42 +0.2

Or see this region's nucleotide sequence