Experiment: R2A with Fusaric 480 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4731 and PP_4732 are separated by 64 nucleotides PP_4732 and PP_4733 are separated by 49 nucleotides PP_4733 and PP_4734 are separated by 132 nucleotides
PP_4731: PP_4731 - Outer membrane protein assembly factor BamE, at 5,380,699 to 5,381,235
_4731
PP_4732: PP_4732 - conserved protein of unknown function, at 5,381,300 to 5,381,848
_4732
PP_4733: PP_4733 - SsrA-binding protein, at 5,381,898 to 5,382,380
_4733
PP_4734: PP_4734 - DNA-binding transcriptional dual regulator, LldR-L-lactate, at 5,382,513 to 5,383,280
_4734
Position (kb) 5381
5382
5383 Strain fitness (log2 ratio) -2
-1
0
1 at 5381.294 kb on + strand at 5381.294 kb on + strand at 5381.295 kb on - strand at 5381.295 kb on - strand at 5381.296 kb on + strand at 5381.296 kb on + strand at 5381.297 kb on - strand at 5381.297 kb on - strand at 5381.297 kb on - strand at 5381.297 kb on - strand at 5381.297 kb on - strand at 5381.814 kb on - strand at 5381.883 kb on + strand at 5381.883 kb on + strand at 5381.883 kb on + strand at 5381.897 kb on + strand at 5382.378 kb on + strand at 5382.378 kb on + strand at 5382.379 kb on - strand at 5382.382 kb on + strand at 5382.382 kb on + strand at 5382.382 kb on + strand at 5382.383 kb on - strand at 5382.383 kb on - strand at 5382.460 kb on - strand at 5382.496 kb on + strand at 5382.505 kb on + strand at 5382.506 kb on - strand at 5382.589 kb on + strand at 5382.590 kb on - strand, within PP_4734 at 5382.590 kb on - strand, within PP_4734 at 5382.652 kb on + strand, within PP_4734 at 5382.652 kb on + strand, within PP_4734 at 5382.652 kb on + strand, within PP_4734 at 5382.706 kb on + strand, within PP_4734 at 5382.706 kb on + strand, within PP_4734 at 5382.706 kb on + strand, within PP_4734 at 5382.706 kb on + strand, within PP_4734 at 5382.706 kb on + strand, within PP_4734 at 5382.706 kb on + strand, within PP_4734 at 5382.707 kb on - strand, within PP_4734 at 5382.868 kb on + strand, within PP_4734 at 5382.868 kb on + strand, within PP_4734 at 5382.869 kb on - strand, within PP_4734 at 5382.869 kb on - strand, within PP_4734 at 5382.869 kb on - strand, within PP_4734 at 5382.940 kb on + strand, within PP_4734 at 5382.941 kb on - strand, within PP_4734 at 5382.941 kb on - strand, within PP_4734 at 5382.941 kb on - strand, within PP_4734 at 5382.941 kb on - strand, within PP_4734 at 5382.941 kb on - strand, within PP_4734 at 5382.944 kb on - strand, within PP_4734 at 5383.264 kb on - strand at 5383.264 kb on - strand at 5383.264 kb on - strand at 5383.324 kb on - strand at 5383.324 kb on - strand at 5383.324 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Fusaric 480 ug/mL remove 5,381,294 + +0.7 5,381,294 + -0.5 5,381,295 - +0.3 5,381,295 - -0.5 5,381,296 + +0.0 5,381,296 + -0.2 5,381,297 - -1.0 5,381,297 - -1.2 5,381,297 - -0.8 5,381,297 - -1.8 5,381,297 - +0.1 5,381,814 - +1.3 5,381,883 + -0.7 5,381,883 + -0.4 5,381,883 + -0.1 5,381,897 + +0.1 5,382,378 + -0.6 5,382,378 + +0.3 5,382,379 - -0.4 5,382,382 + -0.2 5,382,382 + -0.2 5,382,382 + -0.0 5,382,383 - +0.6 5,382,383 - -0.5 5,382,460 - -0.1 5,382,496 + +0.0 5,382,505 + -0.3 5,382,506 - +1.0 5,382,589 + +1.7 5,382,590 - PP_4734 0.10 +0.8 5,382,590 - PP_4734 0.10 +0.9 5,382,652 + PP_4734 0.18 +0.7 5,382,652 + PP_4734 0.18 -1.3 5,382,652 + PP_4734 0.18 -0.3 5,382,706 + PP_4734 0.25 +0.5 5,382,706 + PP_4734 0.25 +1.1 5,382,706 + PP_4734 0.25 +0.5 5,382,706 + PP_4734 0.25 +0.5 5,382,706 + PP_4734 0.25 -0.5 5,382,706 + PP_4734 0.25 -0.5 5,382,707 - PP_4734 0.25 +1.7 5,382,868 + PP_4734 0.46 +1.1 5,382,868 + PP_4734 0.46 -0.2 5,382,869 - PP_4734 0.46 +0.5 5,382,869 - PP_4734 0.46 -1.2 5,382,869 - PP_4734 0.46 +1.5 5,382,940 + PP_4734 0.56 +0.4 5,382,941 - PP_4734 0.56 -1.3 5,382,941 - PP_4734 0.56 +0.9 5,382,941 - PP_4734 0.56 -0.1 5,382,941 - PP_4734 0.56 +0.7 5,382,941 - PP_4734 0.56 +0.3 5,382,944 - PP_4734 0.56 +0.2 5,383,264 - -1.2 5,383,264 - -0.4 5,383,264 - -0.6 5,383,324 - +1.5 5,383,324 - -0.2 5,383,324 - +0.2
Or see this region's nucleotide sequence