Strain Fitness in Pseudomonas putida KT2440 around PP_4729

Experiment: R2A with Fusaric 480 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 480 ug/mL
5,377,624	-				+0.2
5,377,643	-				-2.6
5,378,282	-				+0.1
5,378,282	-				+1.2
5,378,284	-				-0.9
5,378,284	-				-1.0
5,378,284	-				+0.7
5,378,318	+				-0.4
5,378,318	+				-0.1
5,378,319	-				-2.2
5,378,319	-				+0.2
5,378,319	-				+0.1
5,378,338	+				+0.9
5,378,339	-				+1.0
5,378,339	-				-0.4
5,378,339	-				-0.3
5,378,339	-				+0.2
5,378,443	+				-0.0
5,378,443	+				+1.7
5,378,443	+				-2.6
5,378,444	-				-1.0
5,378,860	+		PP_4729	0.27	-0.4
5,378,861	-		PP_4729	0.27	+0.0
5,378,892	-		PP_4729	0.28	-0.1
5,378,990	-		PP_4729	0.34	-1.4
5,378,990	-		PP_4729	0.34	-1.0
5,379,340	+		PP_4729	0.55	+0.3
5,379,340	+		PP_4729	0.55	+0.1
5,379,340	+		PP_4729	0.55	-1.5
5,379,341	-		PP_4729	0.55	+0.3
5,379,341	-		PP_4729	0.55	-1.2
5,379,341	-		PP_4729	0.55	+0.4
5,379,341	-		PP_4729	0.55	-0.8
5,379,424	-		PP_4729	0.60	+0.1
5,379,484	+		PP_4729	0.64	-0.4
5,379,484	+		PP_4729	0.64	-1.0
5,379,484	+		PP_4729	0.64	-0.3
5,379,485	-		PP_4729	0.64	-2.4
5,379,487	-		PP_4729	0.64	-0.6
5,379,487	-		PP_4729	0.64	-0.3
5,379,487	-		PP_4729	0.64	-0.3
5,379,732	+		PP_4729	0.79	-0.1
5,379,733	-		PP_4729	0.79	+0.4
5,379,875	+		PP_4729	0.87	-0.8
5,379,875	+		PP_4729	0.87	-1.1
5,379,876	-		PP_4729	0.87	+0.4
5,379,876	-		PP_4729	0.87	-1.0
5,379,975	+				-0.6
5,380,198	+				-0.2
5,380,209	-				-0.9
5,380,209	-				-0.5
5,380,209	-				-1.1