Strain Fitness in Pseudomonas putida KT2440 around PP_3945

Experiment: R2A with Fusaric 480 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 480 ug/mL
4,446,891	+		PP_3944	0.41	-1.3
4,446,891	+		PP_3944	0.41	+0.2
4,446,891	+				+2.2
4,446,892	-		PP_3944	0.41	-0.3
4,446,895	-		PP_3944	0.42	+0.4
4,446,918	+		PP_3944	0.44	+0.7
4,446,918	+		PP_3944	0.44	-0.0
4,446,918	+		PP_3944	0.44	-0.8
4,446,918	+		PP_3944	0.44	-0.4
4,446,921	+		PP_3944	0.44	-0.2
4,446,922	-		PP_3944	0.44	+0.3
4,446,922	-		PP_3944	0.44	+1.0
4,447,258	-		PP_3944	0.73	+1.1
4,447,258	-		PP_3944	0.73	-0.2
4,447,258	-		PP_3944	0.73	-0.8
4,447,270	-		PP_3944	0.74	-0.4
4,447,270	-		PP_3944	0.74	-0.0
4,447,270	-		PP_3944	0.74	+0.1
4,447,312	-		PP_3944	0.78	+0.9
4,447,312	-		PP_3944	0.78	+1.6
4,447,312	-		PP_3944	0.78	-0.7
4,447,312	-		PP_3944	0.78	+0.6
4,447,321	+		PP_3944	0.79	-1.4
4,447,568	+				+1.6
4,447,568	+				-0.7
4,447,569	-				+0.6
4,447,589	-				-0.7
4,447,715	-				+0.1
4,447,718	+				+0.5
4,447,718	+				+0.3
4,447,719	-				+0.0
4,447,719	-				-0.9
4,447,929	+				+0.0
4,447,930	-				+2.4
4,447,930	-				+1.0
4,447,985	+				+0.9
4,447,985	+				+0.6
4,448,048	+		PP_3945	0.15	-0.9
4,448,048	+		PP_3945	0.15	-0.7
4,448,049	-		PP_3945	0.15	+1.1
4,448,549	+		PP_3945	0.63	+0.0
4,448,549	+		PP_3945	0.63	+0.4
4,448,549	+		PP_3945	0.63	-0.1
4,448,550	-		PP_3945	0.63	+0.1
4,448,550	-		PP_3945	0.63	+0.4
4,448,550	-		PP_3945	0.63	-0.2
4,448,550	-		PP_3945	0.63	-0.3
4,448,601	+				-1.3
4,448,601	+		PP_3945	0.68	+0.9
4,448,601	+		PP_3945	0.68	-0.1
4,448,601	+		PP_3945	0.68	-1.0
4,448,601	+		PP_3945	0.68	-0.9
4,448,602	-		PP_3945	0.68	-0.9
4,448,602	-		PP_3945	0.68	-0.0
4,448,602	-		PP_3945	0.68	+1.2
4,448,602	-		PP_3945	0.68	+0.9
4,448,636	+		PP_3945	0.71	-2.7
4,448,636	+		PP_3945	0.71	-0.0
4,448,636	+		PP_3945	0.71	-0.2
4,448,636	+		PP_3945	0.71	-0.4
4,448,636	+		PP_3945	0.71	-0.0
4,448,637	-		PP_3945	0.71	-0.5
4,448,637	-		PP_3945	0.71	-1.2
4,448,645	+		PP_3945	0.72	-0.9
4,448,646	-		PP_3945	0.72	+0.6
4,448,664	+		PP_3945	0.74	-0.5
4,448,664	+		PP_3945	0.74	-1.0
4,448,665	-		PP_3945	0.74	-0.4
4,448,665	-		PP_3945	0.74	-2.5
4,448,665	-		PP_3945	0.74	-0.2
4,448,666	+		PP_3945	0.74	-0.4
4,448,667	-		PP_3945	0.74	-1.2
4,448,682	+		PP_3945	0.76	+0.9
4,448,682	+		PP_3945	0.76	-0.6
4,448,682	+		PP_3945	0.76	+0.5
4,448,682	+		PP_3945	0.76	-0.1
4,448,682	+		PP_3945	0.76	-0.4
4,448,683	-		PP_3945	0.76	+0.4
4,448,683	-		PP_3945	0.76	-0.8
4,448,771	+		PP_3945	0.84	+0.1
4,448,772	-		PP_3945	0.84	+0.8
4,448,867	-				+0.2
4,448,867	-				+0.4
4,448,867	-				-0.0
4,448,871	-				+0.8
4,448,943	+				-1.4
4,448,944	-				+0.2
4,448,944	-				-0.1
4,448,945	+				+1.2
4,448,945	+				+1.1
4,448,945	+				-0.6
4,448,946	-				-0.6
4,448,946	-				+0.9
4,448,946	-				-0.9
4,448,946	-				-0.8
4,448,946	-				-1.1
4,448,946	-				-0.2
4,449,008	+				+0.7
4,449,008	+				+0.7
4,449,009	-				+1.0
4,449,009	-				-0.4
4,449,009	-				+0.5
4,449,009	-				-3.2
4,449,150	-		PP_3946	0.30	-3.1
4,449,150	-		PP_3946	0.30	-4.0
4,449,441	+				+0.7
4,449,680	-				+0.0
4,449,680	-				-0.6
4,449,689	+				+1.0
4,449,690	-				+0.2
4,449,701	+				+0.3
4,449,800	+				+0.3
4,449,800	+				-0.1
4,449,801	-				-1.9
4,449,801	-				-0.5
4,449,801	-				-0.2
4,449,801	-				-0.9
4,449,801	-				+0.1
4,449,801	-				-1.6
4,449,801	-				+0.2
4,449,801	-				-2.2
4,449,801	-				-0.3
4,449,851	+				-0.1
4,449,858	+				+0.5
4,449,858	+				-0.2
4,449,858	+				+0.7
4,449,858	+				+0.1
4,449,859	-				-0.8
4,449,859	-				+0.2
4,449,925	+				+0.5
4,449,926	-				-2.0
4,449,926	-				+0.1
4,449,926	-				+1.6
4,449,926	-				+0.1