Strain Fitness in Pseudomonas putida KT2440 around PP_5502

Experiment: R2A with Fusaric 480 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 480 ug/mL
2,388,320	+				-0.4
2,388,384	+				+0.5
2,388,384	+				+1.4
2,388,437	-		PP_5502	0.14	+1.3
2,388,472	+		PP_5502	0.30	+0.6
2,388,573	+		PP_5502	0.77	+0.6
2,388,585	+		PP_5502	0.82	+1.0
2,388,585	+		PP_5502	0.82	+1.1
2,388,586	-		PP_5502	0.83	+1.0
2,388,586	-		PP_5502	0.83	+1.7
2,388,623	-				+1.6
2,388,623	-				+0.2
2,388,649	+				+0.8
2,388,649	+				+1.3
2,388,649	+				+1.6
2,388,649	+				+1.4
2,388,649	+				+0.4
2,388,650	-				+1.2
2,388,650	-				+0.6
2,388,650	-				+1.4
2,388,650	-				-0.1
2,388,650	-				-0.5
2,388,650	-				+0.4
2,388,765	-				+1.1
2,388,803	+				+1.2
2,388,803	+				+1.3
2,388,803	+				+1.8
2,388,804	-				+0.8
2,388,811	+				+1.0
2,388,835	-				+0.1
2,388,835	-				+0.8
2,388,991	-				-0.5
2,388,996	+				+0.8
2,388,996	+				+0.9
2,389,011	+				+1.0
2,389,011	+				+2.7
2,389,011	+				+1.4
2,389,011	+				+0.5
2,389,011	+				+1.3
2,389,011	+				+1.0
2,389,011	+				+0.7
2,389,012	-				-0.1
2,389,012	-				+0.5
2,389,012	-				-1.6
2,389,012	-				+0.4
2,389,012	-				+0.2
2,389,012	-				-0.3
2,389,012	-				-0.1
2,389,012	-				+0.1
2,389,118	+				-0.3
2,389,162	+				+1.0
2,389,180	+				+0.4
2,389,180	+				-0.2
2,389,181	-				+1.2
2,389,207	-				+0.1
2,389,364	-		PP_2096	0.10	-0.6
2,389,410	+		PP_2096	0.12	+0.4
2,389,410	+		PP_2096	0.12	-0.1
2,389,411	-		PP_2096	0.12	+2.6