Strain Fitness in Pseudomonas putida KT2440 around PP_4666

Experiment: R2A with Fusaric 480 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_4664 and PP_4665 are separated by 141 nucleotidesPP_4665 and PP_4666 are separated by 191 nucleotidesPP_4666 and PP_4667 are separated by 10 nucleotides PP_4664: PP_4664 - Transcriptional regulator, LysR family, at 5,290,403 to 5,291,284 _4664 PP_4665: PP_4665 - conserved protein of unknown function, at 5,291,426 to 5,291,770 _4665 PP_4666: PP_4666 - 3-hydroxyisobutyrate dehydrogenase, at 5,291,962 to 5,292,849 _4666 PP_4667: PP_4667 - methylmalonate-semialdehyde dehydrogenase, at 5,292,860 to 5,294,386 _4667 Position (kb) 5291 5292 5293Strain fitness (log2 ratio) -3 -2 -1 0 1at 5290.979 kb on + strand, within PP_4664at 5290.979 kb on + strand, within PP_4664at 5290.979 kb on + strand, within PP_4664at 5290.980 kb on - strand, within PP_4664at 5291.015 kb on + strand, within PP_4664at 5291.250 kb on - strandat 5291.385 kb on + strandat 5291.534 kb on + strand, within PP_4665at 5291.535 kb on - strand, within PP_4665at 5291.535 kb on - strand, within PP_4665at 5291.535 kb on - strand, within PP_4665at 5291.603 kb on + strand, within PP_4665at 5291.603 kb on + strand, within PP_4665at 5291.604 kb on - strand, within PP_4665at 5291.604 kb on - strand, within PP_4665at 5291.604 kb on - strand, within PP_4665at 5291.604 kb on - strand, within PP_4665at 5291.608 kb on + strand, within PP_4665at 5291.609 kb on - strandat 5291.639 kb on + strand, within PP_4665at 5291.640 kb on - strand, within PP_4665at 5291.640 kb on - strand, within PP_4665at 5291.722 kb on + strand, within PP_4665at 5291.722 kb on + strand, within PP_4665at 5291.745 kb on + strandat 5291.745 kb on + strandat 5291.746 kb on - strandat 5291.746 kb on - strandat 5291.749 kb on + strandat 5291.749 kb on + strandat 5291.749 kb on + strandat 5291.749 kb on + strandat 5291.749 kb on + strandat 5291.750 kb on - strandat 5291.750 kb on - strandat 5291.750 kb on - strandat 5291.753 kb on + strandat 5291.753 kb on + strandat 5291.754 kb on - strandat 5291.754 kb on - strandat 5291.794 kb on + strandat 5291.794 kb on + strandat 5291.794 kb on + strandat 5291.841 kb on + strandat 5291.842 kb on - strandat 5291.842 kb on - strandat 5291.842 kb on - strandat 5291.857 kb on + strandat 5291.857 kb on + strandat 5291.858 kb on - strandat 5291.916 kb on + strandat 5292.039 kb on - strandat 5292.150 kb on - strand, within PP_4666at 5292.197 kb on + strand, within PP_4666at 5292.197 kb on + strand, within PP_4666at 5292.197 kb on + strand, within PP_4666at 5292.198 kb on - strand, within PP_4666at 5292.198 kb on - strand, within PP_4666at 5292.258 kb on + strand, within PP_4666at 5292.481 kb on - strand, within PP_4666at 5292.481 kb on - strand, within PP_4666at 5292.629 kb on + strand, within PP_4666at 5292.629 kb on + strand, within PP_4666at 5292.855 kb on - strandat 5292.871 kb on + strandat 5292.872 kb on - strandat 5292.945 kb on + strandat 5292.946 kb on - strandat 5293.025 kb on + strand, within PP_4667at 5293.219 kb on + strand, within PP_4667at 5293.221 kb on + strand, within PP_4667at 5293.221 kb on + strand, within PP_4667at 5293.221 kb on + strand, within PP_4667at 5293.221 kb on + strand, within PP_4667at 5293.222 kb on - strand, within PP_4667at 5293.222 kb on - strand, within PP_4667at 5293.222 kb on - strand, within PP_4667at 5293.222 kb on - strand, within PP_4667at 5293.222 kb on - strand, within PP_4667at 5293.339 kb on + strand, within PP_4667at 5293.653 kb on + strand, within PP_4667at 5293.654 kb on - strand, within PP_4667at 5293.676 kb on - strand, within PP_4667at 5293.676 kb on - strand, within PP_4667

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Fusaric 480 ug/mL
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5,290,979 + PP_4664 0.65 -1.4
5,290,979 + PP_4664 0.65 -1.2
5,290,979 + PP_4664 0.65 +1.1
5,290,980 - PP_4664 0.65 -0.9
5,291,015 + PP_4664 0.69 -1.0
5,291,250 - -1.0
5,291,385 + +0.7
5,291,534 + PP_4665 0.31 -0.5
5,291,535 - PP_4665 0.32 +0.0
5,291,535 - PP_4665 0.32 +0.3
5,291,535 - PP_4665 0.32 -0.6
5,291,603 + PP_4665 0.51 -1.7
5,291,603 + PP_4665 0.51 +0.6
5,291,604 - PP_4665 0.52 -0.4
5,291,604 - PP_4665 0.52 -0.0
5,291,604 - PP_4665 0.52 -0.2
5,291,604 - PP_4665 0.52 -1.0
5,291,608 + PP_4665 0.53 +0.8
5,291,609 - +0.0
5,291,639 + PP_4665 0.62 +0.1
5,291,640 - PP_4665 0.62 +0.8
5,291,640 - PP_4665 0.62 -0.2
5,291,722 + PP_4665 0.86 +0.1
5,291,722 + PP_4665 0.86 -0.7
5,291,745 + -0.8
5,291,745 + +0.3
5,291,746 - -0.1
5,291,746 - +0.4
5,291,749 + +1.0
5,291,749 + -0.3
5,291,749 + +0.3
5,291,749 + +0.2
5,291,749 + -3.1
5,291,750 - +1.3
5,291,750 - -0.5
5,291,750 - -0.2
5,291,753 + +0.0
5,291,753 + -1.4
5,291,754 - +0.3
5,291,754 - +0.5
5,291,794 + -0.1
5,291,794 + +0.1
5,291,794 + -1.9
5,291,841 + +0.4
5,291,842 - +0.0
5,291,842 - +0.7
5,291,842 - -0.6
5,291,857 + -0.3
5,291,857 + +0.6
5,291,858 - -0.6
5,291,916 + +0.1
5,292,039 - -2.1
5,292,150 - PP_4666 0.21 +0.0
5,292,197 + PP_4666 0.26 +0.5
5,292,197 + PP_4666 0.26 +0.2
5,292,197 + PP_4666 0.26 -0.5
5,292,198 - PP_4666 0.27 +1.0
5,292,198 - PP_4666 0.27 +0.1
5,292,258 + PP_4666 0.33 +1.0
5,292,481 - PP_4666 0.58 +1.0
5,292,481 - PP_4666 0.58 +0.5
5,292,629 + PP_4666 0.75 +1.2
5,292,629 + PP_4666 0.75 +0.7
5,292,855 - +0.0
5,292,871 + +1.2
5,292,872 - -0.2
5,292,945 + +0.4
5,292,946 - +1.0
5,293,025 + PP_4667 0.11 +0.4
5,293,219 + PP_4667 0.24 -0.1
5,293,221 + PP_4667 0.24 +0.7
5,293,221 + PP_4667 0.24 +0.2
5,293,221 + PP_4667 0.24 -0.0
5,293,221 + PP_4667 0.24 +0.6
5,293,222 - PP_4667 0.24 -0.5
5,293,222 - PP_4667 0.24 -0.4
5,293,222 - PP_4667 0.24 +0.2
5,293,222 - PP_4667 0.24 -0.3
5,293,222 - PP_4667 0.24 +0.7
5,293,339 + PP_4667 0.31 -0.4
5,293,653 + PP_4667 0.52 -0.1
5,293,654 - PP_4667 0.52 +0.9
5,293,676 - PP_4667 0.53 +0.2
5,293,676 - PP_4667 0.53 -0.6

Or see this region's nucleotide sequence