Strain Fitness in Pseudomonas putida KT2440 around PP_4394

Experiment: R2A with Fusaric 480 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 480 ug/mL
4,984,877	+		PP_4393	0.13	+0.3
4,984,877	+		PP_4393	0.13	+0.1
4,984,877	+		PP_4393	0.13	-1.6
4,984,877	+		PP_4393	0.13	-0.0
4,984,933	-		PP_4393	0.19	-0.4
4,984,937	+		PP_4393	0.20	+0.3
4,984,937	+		PP_4393	0.20	-1.2
4,984,937	+				-0.7
4,984,937	+		PP_4393	0.20	-1.3
4,984,937	+		PP_4393	0.20	-1.2
4,984,937	+				-1.6
4,984,937	+		PP_4393	0.20	+0.0
4,984,937	+		PP_4393	0.20	-0.2
4,984,938	-		PP_4393	0.20	+0.1
4,984,940	-		PP_4393	0.20	+0.8
4,984,940	-		PP_4393	0.20	+0.9
4,985,029	+		PP_4393	0.30	-0.5
4,985,030	-		PP_4393	0.30	+0.4
4,985,076	+		PP_4393	0.35	+1.1
4,985,077	-		PP_4393	0.35	+0.7
4,985,284	+		PP_4393	0.57	-0.2
4,985,285	-		PP_4393	0.57	+0.0
4,985,553	+		PP_4393	0.86	+0.7
4,985,553	+		PP_4393	0.86	-0.2
4,985,553	+		PP_4393	0.86	-0.3
4,985,554	-		PP_4393	0.86	+0.1
4,985,927	+		PP_4394	0.22	+0.5
4,985,927	+		PP_4394	0.22	+1.5
4,985,927	+		PP_4394	0.22	+0.6
4,985,927	+		PP_4394	0.22	+0.6
4,985,928	-		PP_4394	0.22	+1.0
4,985,928	-		PP_4394	0.22	-0.6
4,986,072	+		PP_4394	0.42	+0.7
4,986,072	+		PP_4394	0.42	+0.7
4,986,102	+		PP_4394	0.46	+0.8
4,986,102	+		PP_4394	0.46	-0.6
4,986,505	+				+0.8
4,986,505	+				-0.3
4,986,505	+				+0.3
4,986,505	+				+0.9
4,986,505	+				+1.6
4,986,505	+				+1.4
4,986,505	+				+0.7
4,986,506	-				+0.9
4,986,506	-				-0.1
4,986,506	-				-0.4
4,986,506	-				+0.9
4,986,506	-				+0.7
4,986,506	-				-0.3
4,986,509	+				-0.6
4,986,509	+				+0.4
4,986,509	+				+1.1
4,986,510	-				-0.8
4,986,510	-				-0.6
4,986,510	-				+0.1
4,986,510	-				-0.6
4,986,510	-				-2.3
4,986,510	-				-0.8
4,986,554	+				-0.3
4,986,555	-				-0.6
4,986,614	-				-0.9
4,986,657	+				-1.1
4,986,994	+				-0.2
4,987,036	-				-0.1
4,987,036	-				+0.9
4,987,275	+		PP_4396	0.50	+2.2
4,987,275	+		PP_4396	0.50	-0.3
4,987,276	-		PP_4396	0.50	+1.1
4,987,448	+		PP_4396	0.87	+1.2
4,987,453	+		PP_4396	0.88	+1.2