Strain Fitness in Pseudomonas putida KT2440 around PP_4372

Experiment: R2A with Fusaric 480 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 480 ug/mL
4,961,581	+		PP_4371	0.37	+0.5
4,961,581	+		PP_4371	0.37	-0.5
4,961,581	+		PP_4371	0.37	+0.6
4,961,582	-		PP_4371	0.37	+1.4
4,961,582	-		PP_4371	0.37	-0.2
4,961,582	-		PP_4371	0.37	-0.1
4,961,651	+		PP_4371	0.42	+0.6
4,961,651	+		PP_4371	0.42	-0.5
4,961,652	-		PP_4371	0.42	+0.8
4,961,652	-		PP_4371	0.42	+0.3
4,961,982	+		PP_4371	0.66	-0.8
4,962,139	+		PP_4371	0.78	-0.0
4,962,140	-		PP_4371	0.78	-0.1
4,962,140	-		PP_4371	0.78	+0.0
4,962,313	-				-0.2
4,962,353	-				+0.8
4,962,438	+				+0.6
4,962,438	+				+2.6
4,962,438	+				+0.8
4,962,439	-				+0.3
4,962,439	-				+0.1
4,962,439	-				-0.7
4,962,493	+				+0.3
4,962,494	-				+0.6
4,962,596	-		PP_4372	0.13	+0.9
4,962,673	+		PP_4372	0.19	+1.7
4,962,688	-		PP_4372	0.21	+1.0
4,962,688	-		PP_4372	0.21	-0.2
4,963,038	+		PP_4372	0.49	+0.6
4,963,276	+		PP_4372	0.69	+0.7
4,963,277	-		PP_4372	0.69	+1.4
4,963,277	-		PP_4372	0.69	-0.8
4,963,277	-		PP_4372	0.69	-0.8
4,963,521	+		PP_4372	0.89	+1.0
4,963,522	-		PP_4372	0.89	+0.9
4,963,522	-		PP_4372	0.89	-1.7
4,963,634	+				+0.5
4,963,706	+				-0.3
4,963,707	-				-0.2
4,963,707	-				-1.1
4,963,747	-				-2.3
4,963,758	-				+0.7
4,963,925	+				+1.5
4,963,925	+				+1.1
4,963,926	-				+1.2
4,963,954	-				+0.1
4,963,992	+				+1.4
4,964,048	+		PP_4373	0.11	+0.8
4,964,049	-		PP_4373	0.11	+0.6
4,964,049	-		PP_4373	0.11	+1.8
4,964,184	-		PP_4373	0.20	+1.6
4,964,444	+		PP_4373	0.38	+1.5
4,964,444	+		PP_4373	0.38	+2.2
4,964,445	-		PP_4373	0.38	+1.5
4,964,445	-				+3.4
4,964,445	-		PP_4373	0.38	+1.1
4,964,447	+		PP_4373	0.38	+1.9
4,964,448	-		PP_4373	0.38	+1.3
4,964,448	-		PP_4373	0.38	+1.3
4,964,448	-		PP_4373	0.38	+1.9
4,964,448	-		PP_4373	0.38	+1.8
4,964,448	-		PP_4373	0.38	+1.5
4,964,448	-		PP_4373	0.38	+1.1
4,964,448	-		PP_4373	0.38	+1.2
4,964,448	-		PP_4373	0.38	+1.2
4,964,544	+		PP_4373	0.45	+1.4
4,964,562	+		PP_4373	0.46	+1.2
4,964,562	+		PP_4373	0.46	+1.4
4,964,562	+		PP_4373	0.46	+2.2
4,964,562	+		PP_4373	0.46	+1.9
4,964,563	-		PP_4373	0.46	+1.1
4,964,563	-		PP_4373	0.46	+1.7