Strain Fitness in Pseudomonas putida KT2440 around PP_4361

Experiment: R2A with Fusaric 480 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 480 ug/mL
4,950,055	-		PP_4358	0.70	+0.9
4,950,055	-		PP_4358	0.70	+2.1
4,950,055	-		PP_4358	0.70	+1.1
4,950,069	+		PP_4358	0.72	+0.7
4,950,069	+		PP_4358	0.72	+1.3
4,950,069	+		PP_4358	0.72	+1.1
4,950,070	-		PP_4358	0.72	+0.8
4,950,151	+		PP_4358	0.80	+1.9
4,950,152	-		PP_4358	0.80	+1.2
4,950,153	+		PP_4358	0.80	+0.3
4,950,154	-		PP_4358	0.80	+1.8
4,950,208	+		PP_4358	0.86	+0.2
4,950,335	+				+0.8
4,950,337	-				+1.9
4,950,354	+				+1.6
4,950,354	+				+1.0
4,950,355	-				-0.2
4,950,355	-				-0.3
4,950,355	-				+1.1
4,950,355	-				-0.3
4,950,362	+				-0.7
4,950,584	+		PP_4359	0.46	+1.1
4,950,584	+		PP_4359	0.46	+1.2
4,950,584	+		PP_4359	0.46	+0.4
4,950,585	-		PP_4359	0.47	+0.5
4,950,585	-		PP_4359	0.47	+0.3
4,950,585	-		PP_4359	0.47	+0.5
4,950,592	+		PP_4359	0.48	+1.3
4,950,592	+		PP_4359	0.48	+1.3
4,950,606	+		PP_4359	0.51	+0.7
4,950,606	+		PP_4359	0.51	+0.2
4,950,607	-		PP_4359	0.51	+0.5
4,950,663	+		PP_4359	0.62	+1.5
4,950,663	+		PP_4359	0.62	+0.4
4,950,663	+		PP_4359	0.62	+1.1
4,950,663	+		PP_4359	0.62	+0.4
4,950,663	+		PP_4359	0.62	+1.6
4,950,663	+		PP_4359	0.62	+1.6
4,950,664	-		PP_4359	0.62	+1.1
4,950,664	-		PP_4359	0.62	+0.6
4,950,664	-		PP_4359	0.62	+1.3
4,950,664	-		PP_4359	0.62	+0.0
4,950,665	+		PP_4359	0.63	+1.3
4,950,743	-		PP_4359	0.78	+0.8
4,950,814	+				+0.5
4,950,856	+				+1.5
4,950,857	-				-0.1
4,950,857	-				-0.2
4,950,911	-				+0.6
4,951,006	-				-0.9
4,951,006	-				-0.4
4,951,014	+				+1.3
4,951,014	+				+0.8
4,951,014	+				+0.1
4,951,014	+				+1.0
4,951,014	+				+1.6
4,951,015	-				+0.5
4,951,015	-				+1.2
4,951,015	-				+0.7
4,951,392	+		PP_4361	0.30	-0.2
4,951,392	+		PP_4361	0.30	+1.0
4,951,392	+		PP_4361	0.30	+1.3
4,951,392	+		PP_4361	0.30	+0.0
4,951,393	-		PP_4361	0.30	+1.3
4,951,393	-		PP_4361	0.30	+0.8
4,951,393	-		PP_4361	0.30	+1.2
4,951,640	-		PP_4361	0.50	-0.2
4,951,663	+		PP_4361	0.52	+1.3
4,951,663	+		PP_4361	0.52	+1.4
4,951,664	-		PP_4361	0.52	+0.3
4,952,358	+				-0.2
4,952,378	+				+0.1
4,952,439	-		PP_4362	0.28	-0.7
4,952,627	+		PP_4362	0.83	+0.4
4,952,627	+		PP_4362	0.83	-0.3
4,952,628	-		PP_4362	0.84	+0.9
4,952,628	-		PP_4362	0.84	-1.0
4,952,628	-		PP_4362	0.84	+0.7
4,952,662	+				+0.5
4,952,663	-				+0.4
4,952,676	+				-0.4
4,952,676	+				+1.0
4,952,676	+				+1.0
4,952,676	+				-0.2
4,952,677	-				-0.7
4,952,677	-				-1.4
4,952,677	-				-0.2
4,952,718	+				+0.3
4,952,746	+				+0.3
4,952,746	+				+0.3
4,952,746	+				-1.2
4,952,956	+		PP_4363	0.13	-1.2
4,952,956	+				+0.1
4,952,956	+		PP_4363	0.13	-0.8
4,952,957	-		PP_4363	0.13	-0.5
4,952,957	-		PP_4363	0.13	-0.4
4,952,957	-		PP_4363	0.13	-0.3
4,953,002	+		PP_4363	0.15	-0.7
4,953,005	+		PP_4363	0.16	-0.3
4,953,005	+		PP_4363	0.16	-0.5
4,953,080	+		PP_4363	0.20	-0.0
4,953,081	-		PP_4363	0.20	+0.6
4,953,081	-		PP_4363	0.20	-1.2
4,953,081	-		PP_4363	0.20	-0.4
4,953,081	-		PP_4363	0.20	-0.5
4,953,114	+		PP_4363	0.22	-0.6
4,953,115	-		PP_4363	0.22	-0.1
4,953,159	-		PP_4363	0.25	-0.3
4,953,240	+		PP_4363	0.30	+0.6
4,953,240	+		PP_4363	0.30	+1.5
4,953,240	+		PP_4363	0.30	+0.6
4,953,240	+		PP_4363	0.30	+0.0
4,953,240	+		PP_4363	0.30	+0.6
4,953,248	+		PP_4363	0.30	+0.1
4,953,249	-		PP_4363	0.30	+0.3
4,953,249	-		PP_4363	0.30	+0.2
4,953,249	-		PP_4363	0.30	+0.2