Strain Fitness in Pseudomonas putida KT2440 around PP_4251

Experiment: R2A with Fusaric 480 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 480 ug/mL
4,836,465	+		PP_4250	0.33	+1.6
4,836,466	-		PP_4250	0.33	+0.2
4,836,466	-		PP_4250	0.33	+0.3
4,836,466	-		PP_4250	0.33	+0.4
4,836,570	+		PP_4250	0.40	-0.1
4,836,607	-		PP_4250	0.43	+0.0
4,836,660	+		PP_4250	0.47	+0.5
4,836,660	+		PP_4250	0.47	+0.8
4,836,660	+		PP_4250	0.47	+0.3
4,836,660	+		PP_4250	0.47	-0.1
4,836,661	-		PP_4250	0.47	-0.5
4,836,661	-		PP_4250	0.47	+2.0
4,836,661	-		PP_4250	0.47	-0.4
4,836,661	-		PP_4250	0.47	-0.1
4,836,663	+		PP_4250	0.47	-0.5
4,836,663	+		PP_4250	0.47	+0.3
4,836,664	-		PP_4250	0.47	+1.0
4,836,666	+		PP_4250	0.47	-0.7
4,836,666	+		PP_4250	0.47	+1.1
4,836,666	+		PP_4250	0.47	+0.9
4,836,666	+		PP_4250	0.47	+0.9
4,836,667	-		PP_4250	0.47	-1.5
4,836,667	-		PP_4250	0.47	+0.6
4,836,667	-		PP_4250	0.47	+1.1
4,836,697	-		PP_4250	0.49	-1.3
4,836,697	-		PP_4250	0.49	+1.1
4,836,697	-		PP_4250	0.49	-0.6
4,836,697	-		PP_4250	0.49	+1.0
4,836,774	+		PP_4250	0.55	-1.3
4,836,774	+		PP_4250	0.55	-0.3
4,836,942	+		PP_4250	0.67	+0.2
4,837,081	-		PP_4250	0.76	-2.1
4,837,119	+		PP_4250	0.79	-2.5
4,837,119	+		PP_4250	0.79	+1.0
4,837,119	+		PP_4250	0.79	-0.7
4,837,120	-		PP_4250	0.79	-1.2
4,837,120	-		PP_4250	0.79	+1.0
4,837,167	-		PP_4250	0.82	+0.1
4,837,177	-		PP_4250	0.83	-0.8
4,837,254	+		PP_4250	0.88	+0.1
4,837,255	-		PP_4250	0.88	-2.3
4,837,484	+				-0.7
4,837,485	-				+1.2
4,837,485	-				+0.4
4,837,606	+		PP_4251	0.29	+0.2
4,837,607	-		PP_4251	0.29	-0.4
4,837,804	+		PP_4251	0.61	+0.5
4,837,804	+		PP_4251	0.61	+0.1
4,837,804	+		PP_4251	0.61	+0.9
4,837,805	-		PP_4251	0.61	+1.8
4,837,846	+		PP_4251	0.68	+0.9
4,837,927	+		PP_4251	0.81	+1.8
4,837,999	+				+0.6
4,838,000	-				+1.2
4,838,228	+				+0.2
4,838,254	+				+0.1
4,838,254	+				-3.1
4,838,255	-				+1.4
4,838,258	+				+0.9
4,838,258	+				+0.4
4,838,258	+				+0.2
4,838,258	+				+0.1
4,838,259	-				+0.2
4,838,259	-				-1.0
4,838,268	+				+0.9
4,838,268	+				+0.6
4,838,268	+				+1.2
4,838,376	+		PP_4253	0.15	-0.6
4,838,377	-		PP_4253	0.15	-1.4
4,838,384	+		PP_4253	0.16	+0.7
4,838,384	+		PP_4253	0.16	-0.8
4,838,451	-				+1.2
4,838,463	-		PP_4253	0.24	+0.5
4,839,010	+		PP_4253	0.82	-1.7
4,839,014	+		PP_4253	0.82	-1.5