Strain Fitness in Pseudomonas putida KT2440 around PP_3392

Experiment: R2A with Fusaric 480 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 480 ug/mL
3,842,065	+		PP_3391	0.38	-1.0
3,842,094	+		PP_3391	0.40	-0.5
3,842,094	+		PP_3391	0.40	+1.3
3,842,094	+		PP_3391	0.40	+0.4
3,842,094	+		PP_3391	0.40	-0.6
3,842,095	-		PP_3391	0.40	+0.7
3,842,097	+		PP_3391	0.40	-1.3
3,842,098	-		PP_3391	0.40	+1.6
3,842,098	-		PP_3391	0.40	-0.3
3,842,098	-		PP_3391	0.40	+0.7
3,842,102	-		PP_3391	0.41	+0.2
3,842,102	-		PP_3391	0.41	+0.1
3,842,102	-		PP_3391	0.41	-1.1
3,842,334	-		PP_3391	0.58	+1.0
3,842,516	+		PP_3391	0.72	+0.2
3,842,532	+		PP_3391	0.73	-0.1
3,842,532	+		PP_3391	0.73	+0.3
3,842,533	-		PP_3391	0.73	-0.5
3,842,540	-		PP_3391	0.74	+0.1
3,842,541	+		PP_3391	0.74	-0.1
3,842,542	-		PP_3391	0.74	-0.6
3,842,549	+		PP_3391	0.74	+0.2
3,842,549	+		PP_3391	0.74	+0.7
3,842,656	-		PP_3391	0.83	-0.4
3,842,656	-		PP_3391	0.83	-0.8
3,842,688	+		PP_3391	0.85	-0.0
3,842,761	-				+0.2
3,842,782	+				+0.1
3,842,783	-				-0.2
3,842,818	-				-0.6
3,842,819	+				-0.6
3,842,819	+				+0.9
3,842,819	+				+0.4
3,842,820	-				-0.8
3,842,820	-				-0.4
3,842,907	+				-1.0
3,842,907	+				-0.5
3,842,960	+				+1.4
3,842,961	-				-0.4
3,843,001	+				+0.2
3,843,002	-				-0.4
3,843,002	-				-0.6
3,843,032	+		PP_3392	0.15	+1.5
3,843,058	-		PP_3392	0.20	-0.4
3,843,460	+				-0.5
3,843,461	-				-0.2
3,843,461	-				-0.2
3,843,466	+				-4.2
3,843,467	-				+0.1
3,843,467	-				-1.0
3,843,467	-				+0.2
3,843,648	+		PP_3393	0.13	+0.9
3,843,709	-		PP_3393	0.18	-0.4
3,843,709	-		PP_3393	0.18	-0.0
3,843,709	-		PP_3393	0.18	-0.4
3,843,873	-		PP_3393	0.32	+1.0
3,843,921	+		PP_3393	0.36	+0.6
3,843,994	+		PP_3393	0.42	+1.0
3,843,994	+		PP_3393	0.42	-0.6
3,843,994	+		PP_3393	0.42	-0.9
3,843,995	-		PP_3393	0.42	+1.4
3,843,995	-		PP_3393	0.42	-0.6
3,844,054	+		PP_3393	0.47	+0.5
3,844,054	+		PP_3393	0.47	-0.8
3,844,055	-		PP_3393	0.48	+0.3
3,844,055	-		PP_3393	0.48	+0.8
3,844,064	+		PP_3393	0.48	+0.7
3,844,064	+		PP_3393	0.48	-0.7
3,844,065	-		PP_3393	0.48	+0.4
3,844,065	-		PP_3393	0.48	+0.9
3,844,065	-		PP_3393	0.48	-0.8
3,844,065	-		PP_3393	0.48	+0.2
3,844,065	-		PP_3393	0.48	+1.0
3,844,096	+		PP_3393	0.51	+0.8
3,844,244	-		PP_3393	0.63	+0.1
3,844,266	+		PP_3393	0.65	+1.2
3,844,267	-		PP_3393	0.65	-1.9
3,844,297	+		PP_3393	0.68	-1.2
3,844,297	+		PP_3393	0.68	+0.4
3,844,298	-		PP_3393	0.68	-0.6
3,844,330	+		PP_3393	0.71	-0.7
3,844,330	+		PP_3393	0.71	-1.1
3,844,331	-		PP_3393	0.71	+0.0
3,844,367	-		PP_3393	0.74	-0.3
3,844,388	+		PP_3393	0.75	-0.4
3,844,389	-		PP_3393	0.76	-1.1
3,844,389	-		PP_3393	0.76	+0.3