Strain Fitness in Pseudomonas putida KT2440 around PP_3322

Experiment: R2A with Fusaric 480 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 480 ug/mL
3,756,706	-				+0.1
3,756,708	+				+0.9
3,756,708	+				+0.4
3,756,708	+				-0.7
3,756,709	-				-1.6
3,756,760	-				-0.5
3,756,800	+				+0.5
3,756,819	-				-0.3
3,756,884	-				+0.8
3,756,911	+				+0.4
3,756,912	-				+0.7
3,756,912	-				+0.6
3,756,950	+				+0.6
3,756,955	+				+1.2
3,756,956	-				-2.2
3,756,990	+		PP_3320	0.26	-2.4
3,756,990	+		PP_3320	0.26	-0.3
3,756,991	-		PP_3320	0.26	+0.9
3,756,991	-		PP_3320	0.26	+0.9
3,757,092	-		PP_3320	0.86	-0.8
3,757,092	-		PP_3320	0.86	+0.4
3,757,092	-		PP_3320	0.86	+0.5
3,757,205	-				-0.6
3,757,220	+				-1.7
3,757,220	+				+0.7
3,757,221	-				+0.4
3,757,221	-				-0.9
3,757,221	-				-0.7
3,757,293	+		PP_3321	0.22	-1.5
3,757,294	-		PP_3321	0.22	+0.5
3,757,342	-		PP_3321	0.32	-0.5
3,757,342	-		PP_3321	0.32	+1.5
3,757,342	-		PP_3321	0.32	-0.4
3,757,395	+		PP_3321	0.42	-0.1
3,757,395	+		PP_3321	0.42	+0.1
3,757,395	+		PP_3321	0.42	-0.1
3,757,395	+		PP_3321	0.42	+1.3
3,757,396	-		PP_3321	0.42	+1.3
3,757,396	-		PP_3321	0.42	+0.1
3,757,396	-		PP_3321	0.42	-0.1
3,757,396	-		PP_3321	0.42	-0.6
3,757,467	+		PP_3321	0.56	-1.1
3,757,467	+		PP_3321	0.56	-0.0
3,757,468	-		PP_3321	0.56	+0.1
3,757,468	-		PP_3321	0.56	-0.5
3,757,569	+		PP_3321	0.76	-0.0
3,757,570	-		PP_3321	0.76	-0.1
3,757,570	-		PP_3321	0.76	-1.9
3,757,703	+				+0.1
3,757,704	-				+0.7
3,757,704	-				-0.4
3,757,704	-				-0.0
3,757,881	+		PP_3322	0.19	+0.6
3,757,882	-		PP_3322	0.19	+0.9
3,757,914	+		PP_3322	0.23	+0.1
3,757,915	-		PP_3322	0.23	+1.4
3,758,096	+		PP_3322	0.41	+0.4
3,758,097	-		PP_3322	0.41	+0.6
3,758,097	-		PP_3322	0.41	+1.1
3,758,097	-		PP_3322	0.41	+0.2
3,758,163	+		PP_3322	0.47	+0.4
3,758,163	+		PP_3322	0.47	-0.5
3,758,163	+				+0.8
3,758,163	+		PP_3322	0.47	+1.2
3,758,300	+		PP_3322	0.61	-1.8
3,758,300	+		PP_3322	0.61	+0.5
3,758,313	-		PP_3322	0.62	+0.8
3,758,328	-		PP_3322	0.64	+0.4
3,758,328	-		PP_3322	0.64	+0.6
3,758,387	+		PP_3322	0.70	+1.1
3,758,387	+		PP_3322	0.70	-0.5
3,758,388	-		PP_3322	0.70	+0.2
3,758,431	-		PP_3322	0.74	+0.8
3,758,487	-		PP_3322	0.80	-0.5
3,758,487	-		PP_3322	0.80	-0.2
3,758,558	+		PP_3322	0.87	+0.6
3,758,648	-				+1.1
3,758,662	+				+0.9
3,758,663	-				-1.1
3,758,757	-				+0.5
3,758,757	-				-0.2
3,758,819	+		PP_3323	0.14	+0.6
3,758,819	+		PP_3323	0.14	+0.3
3,758,914	+		PP_3323	0.29	-0.2
3,758,914	+				-1.9
3,759,025	+		PP_3323	0.47	+1.2
3,759,128	+		PP_3323	0.64	+1.9
3,759,129	-		PP_3323	0.64	-0.6
3,759,198	+		PP_3323	0.75	+0.7
3,759,199	-		PP_3323	0.76	+1.3
3,759,199	-		PP_3323	0.76	+0.2
3,759,390	+				+0.5
3,759,390	+				-0.4
3,759,391	-				-0.2
3,759,392	+				+0.4
3,759,392	+				+2.0
3,759,392	+				+0.3
3,759,392	+				+1.0
3,759,392	+				+0.3
3,759,392	+				+0.6
3,759,392	+				+0.8
3,759,392	+				-1.3
3,759,393	-				+0.3
3,759,393	-				+0.5
3,759,393	-				-0.1
3,759,393	-				-0.7
3,759,393	-				+1.2
3,759,393	-				-1.2
3,759,393	-				-0.0
3,759,512	+		PP_3324	0.15	+0.6
3,759,513	-		PP_3324	0.15	+0.5