Strain Fitness in Pseudomonas putida KT2440 around PP_3318

Experiment: R2A with Fusaric 480 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 480 ug/mL
3,753,130	-		PP_3316	0.73	+0.3
3,753,208	+		PP_3316	0.76	-0.2
3,753,208	+		PP_3316	0.76	-0.4
3,753,208	+		PP_3316	0.76	-0.2
3,753,208	+		PP_3316	0.76	-0.0
3,753,208	+		PP_3316	0.76	-0.2
3,753,212	+		PP_3316	0.76	-0.4
3,753,212	+		PP_3316	0.76	-0.3
3,753,212	+		PP_3316	0.76	-1.4
3,753,212	+		PP_3316	0.76	-0.2
3,753,213	-		PP_3316	0.76	+0.5
3,753,213	-		PP_3316	0.76	-0.5
3,753,213	-		PP_3316	0.76	-0.9
3,753,213	-		PP_3316	0.76	+1.1
3,753,213	-		PP_3316	0.76	-0.6
3,753,213	-		PP_3316	0.76	+0.2
3,753,410	-		PP_3316	0.83	+0.1
3,753,918	+				+0.4
3,754,186	+		PP_3318	0.57	+0.5
3,754,186	+		PP_3318	0.57	+0.5
3,754,298	+				-0.1
3,754,333	+				+0.6
3,754,408	+				+0.0
3,754,409	-				-2.2
3,754,409	-				+0.2
3,754,418	+				+0.3
3,754,459	+				-1.4
3,754,460	-				+0.1
3,754,460	-				+0.5
3,754,581	+				-1.8
3,754,582	-				+0.3
3,754,619	-				-0.7
3,754,625	+				-0.2
3,754,779	+				-0.2
3,754,780	-				+0.6
3,754,823	+		PP_3319	0.12	-0.3
3,754,823	+		PP_3319	0.12	+0.5
3,754,824	-		PP_3319	0.12	+0.1
3,754,824	-		PP_3319	0.12	+0.5
3,754,824	-		PP_3319	0.12	+0.7
3,754,871	+		PP_3319	0.14	+0.9
3,754,872	-		PP_3319	0.14	+1.0
3,754,872	-		PP_3319	0.14	+0.7
3,754,920	+		PP_3319	0.16	+0.3
3,754,920	+		PP_3319	0.16	-0.2
3,754,920	+		PP_3319	0.16	+0.6
3,754,927	+		PP_3319	0.17	+0.1
3,754,927	+		PP_3319	0.17	-0.8
3,754,927	+		PP_3319	0.17	+1.3
3,754,928	-		PP_3319	0.17	-1.3
3,754,928	-		PP_3319	0.17	-1.1
3,754,928	-		PP_3319	0.17	-1.3
3,754,928	-		PP_3319	0.17	-0.6
3,754,952	-		PP_3319	0.18	-0.3
3,754,990	+		PP_3319	0.20	-0.5
3,754,992	+		PP_3319	0.20	-0.2
3,754,993	-		PP_3319	0.20	+0.5
3,755,132	+		PP_3319	0.26	-0.5
3,755,133	-		PP_3319	0.26	-0.6
3,755,133	-		PP_3319	0.26	-0.8
3,755,133	-		PP_3319	0.26	+0.5
3,755,136	+				-0.7
3,755,137	-		PP_3319	0.26	+0.2
3,755,211	-		PP_3319	0.30	-0.4
3,755,211	-		PP_3319	0.30	-0.3