Strain Fitness in Pseudomonas putida KT2440 around PP_3302

Experiment: R2A with Fusaric 480 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 480 ug/mL
3,734,125	+		PP_3301	0.11	+0.4
3,734,126	-		PP_3301	0.11	-0.6
3,734,165	-		PP_3301	0.15	-0.3
3,734,323	+		PP_3301	0.29	+0.1
3,734,415	+		PP_3301	0.37	+0.8
3,734,513	-		PP_3301	0.46	-1.1
3,734,593	+		PP_3301	0.53	-0.1
3,734,594	-		PP_3301	0.53	+1.1
3,734,594	-		PP_3301	0.53	+0.6
3,734,632	-		PP_3301	0.57	+0.6
3,734,632	-		PP_3301	0.57	-0.5
3,734,683	+		PP_3301	0.62	+0.5
3,734,773	-		PP_3301	0.70	+0.9
3,734,819	+		PP_3301	0.74	+0.7
3,734,819	+		PP_3301	0.74	+0.4
3,734,819	+		PP_3301	0.74	-0.8
3,734,866	+		PP_3301	0.78	+0.7
3,734,962	+		PP_3301	0.87	+0.4
3,734,962	+		PP_3301	0.87	-0.6
3,734,962	+		PP_3301	0.87	-1.6
3,734,962	+		PP_3301	0.87	+0.5
3,734,963	-		PP_3301	0.87	-0.6
3,734,963	-		PP_3301	0.87	-0.9
3,735,126	+				+0.1
3,735,348	-				-0.5
3,735,546	-		PP_3302	0.14	-2.4
3,736,233	+		PP_3302	0.37	-1.5
3,736,276	+		PP_3302	0.38	+0.1
3,736,302	+		PP_3302	0.39	+0.0
3,736,391	+		PP_3302	0.42	-0.1
3,736,392	-		PP_3302	0.42	-0.0
3,736,565	+		PP_3302	0.47	-1.2
3,736,621	+		PP_3302	0.49	-0.6
3,736,622	-		PP_3302	0.49	-0.1
3,736,626	-		PP_3302	0.49	-2.1
3,736,626	-		PP_3302	0.49	-1.4
3,736,640	+		PP_3302	0.50	-0.1
3,736,641	-				+0.9
3,736,641	-		PP_3302	0.50	+0.2
3,736,641	-		PP_3302	0.50	-2.7
3,736,681	+		PP_3302	0.51	+0.3
3,736,682	-		PP_3302	0.51	+0.2
3,736,682	-		PP_3302	0.51	+0.0
3,736,747	-		PP_3302	0.53	+0.5
3,736,747	-		PP_3302	0.53	+0.7
3,736,809	-		PP_3302	0.55	-0.6
3,736,851	+		PP_3302	0.56	+0.0
3,736,852	-		PP_3302	0.57	+0.9
3,736,863	+		PP_3302	0.57	-0.3
3,736,864	-		PP_3302	0.57	+0.1
3,736,898	+				-0.0
3,736,899	-		PP_3302	0.58	+0.5
3,736,899	-		PP_3302	0.58	-0.1
3,736,899	-		PP_3302	0.58	-0.6
3,736,899	-		PP_3302	0.58	+0.3
3,737,353	+		PP_3302	0.73	+1.0
3,737,373	+		PP_3302	0.73	+0.2
3,737,373	+		PP_3302	0.73	-0.8
3,737,374	-		PP_3302	0.73	-1.3
3,737,374	-		PP_3302	0.73	-0.0
3,737,656	+		PP_3302	0.83	-1.1
3,737,657	-		PP_3302	0.83	+0.5
3,737,657	-		PP_3302	0.83	+0.6
3,737,752	+		PP_3302	0.86	-2.1
3,737,753	-		PP_3302	0.86	-0.5
3,737,805	+		PP_3302	0.87	+0.6
3,737,806	-		PP_3302	0.87	-0.3
3,737,808	+		PP_3302	0.87	+0.3
3,737,809	-		PP_3302	0.87	+0.1
3,737,814	+		PP_3302	0.88	+0.9
3,737,815	-		PP_3302	0.88	+0.5
3,737,815	-		PP_3302	0.88	+0.7
3,737,817	+		PP_3302	0.88	-0.9
3,737,817	+		PP_3302	0.88	+1.7
3,737,817	+		PP_3302	0.88	+0.5
3,737,817	+		PP_3302	0.88	+0.2
3,737,818	-		PP_3302	0.88	-0.4
3,737,818	-		PP_3302	0.88	-1.9
3,738,065	+				-0.8
3,738,128	+				-1.5
3,738,198	+				-0.4
3,738,198	+				-0.9
3,738,199	-				+0.2
3,738,342	+				-1.4
3,738,474	-		PP_3303	0.17	+0.4
3,738,753	+		PP_3303	0.38	-0.8
3,738,754	-		PP_3303	0.39	+0.1
3,738,759	-		PP_3303	0.39	-0.5
3,738,759	-		PP_3303	0.39	-1.3
3,738,759	-		PP_3303	0.39	+1.7
3,739,091	+		PP_3303	0.64	-0.7
3,739,092	-		PP_3303	0.64	-1.1
3,739,112	+		PP_3303	0.66	-0.1
3,739,113	-		PP_3303	0.66	-1.2
3,739,113	-		PP_3303	0.66	+0.5