Strain Fitness in Pseudomonas putida KT2440 around PP_2550

Experiment: R2A with Fusaric 480 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 480 ug/mL
2,894,948	+		PP_2549	0.44	-0.4
2,894,948	+		PP_2549	0.44	+0.6
2,894,949	-		PP_2549	0.44	-0.8
2,894,949	-		PP_2549	0.44	-1.1
2,894,998	-		PP_2549	0.47	+0.0
2,895,034	-		PP_2549	0.50	-0.4
2,895,034	-		PP_2549	0.50	-0.7
2,895,201	-				-0.6
2,895,203	+		PP_2549	0.62	-1.4
2,895,204	-		PP_2549	0.62	+0.6
2,895,274	-		PP_2549	0.67	+0.1
2,895,449	+		PP_2549	0.80	-0.1
2,895,449	+		PP_2549	0.80	+0.1
2,895,449	+		PP_2549	0.80	-0.0
2,895,462	-		PP_2549	0.80	+1.4
2,895,769	+				-0.6
2,895,857	+				+0.2
2,895,857	+				+0.2
2,895,858	-				-0.7
2,896,077	+				+0.9
2,896,078	-		PP_2550	0.35	+0.4
2,896,222	+		PP_2550	0.55	+0.7
2,896,223	-		PP_2550	0.55	+0.6
2,896,223	-		PP_2550	0.55	+0.2
2,896,524	+				-0.3
2,896,524	+				+0.1
2,896,524	+				-1.0
2,896,524	+				+0.9
2,896,525	-				+0.4
2,896,525	-				-0.2
2,896,525	-				-0.4
2,896,525	-				+1.6
2,896,525	-				+0.7
2,896,525	-				-0.7
2,896,747	+				-1.5
2,896,747	+				+0.6
2,896,865	+		PP_2551	0.19	+1.1
2,896,865	+		PP_2551	0.19	+0.5
2,896,865	+		PP_2551	0.19	+0.2
2,896,866	-		PP_2551	0.19	-0.3
2,896,866	-		PP_2551	0.19	-1.4
2,896,874	-		PP_2551	0.20	+1.8
2,897,000	+		PP_2551	0.34	+0.5
2,897,097	-				-1.0
2,897,197	-		PP_2551	0.54	-0.4
2,897,255	+		PP_2551	0.61	+0.3
2,897,264	+		PP_2551	0.62	-1.6
2,897,265	-		PP_2551	0.62	+0.5
2,897,382	+		PP_2551	0.74	-0.2