Strain Fitness in Pseudomonas putida KT2440 around PP_2343

Experiment: R2A with Fusaric 480 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 480 ug/mL
2,673,144	-		PP_2340	0.88	+1.3
2,673,152	+		PP_2340	0.90	+0.5
2,673,152	+		PP_2340	0.90	+0.8
2,673,152	+		PP_2340	0.90	+0.5
2,673,155	-				+0.6
2,673,229	+				+0.5
2,673,365	-		PP_2341	0.42	-2.7
2,673,365	-		PP_2341	0.42	-3.1
2,673,385	+		PP_2341	0.47	-2.3
2,673,386	-				+1.1
2,673,584	+				+0.4
2,673,584	+				-1.0
2,673,584	+				-1.4
2,673,585	-				+2.5
2,673,585	-				-0.0
2,673,586	+				+0.5
2,673,587	-				+0.5
2,673,587	-				-0.2
2,673,587	-				-0.1
2,673,587	-				+0.6
2,673,587	-				-0.4
2,673,643	+				+0.1
2,673,643	+				-0.3
2,673,643	+				-0.5
2,673,644	-				+0.4
2,673,644	-				+0.4
2,673,691	-		PP_5519	0.31	+0.4
2,673,745	+		PP_5519	0.62	+0.5
2,673,746	-		PP_5519	0.63	-0.8
2,673,821	+				+0.0
2,673,821	+				+0.4
2,673,821	+				-0.2
2,673,821	+				+0.2
2,673,821	+				-0.2
2,673,822	-				+0.2
2,673,822	-				-0.2
2,673,822	-				-1.0
2,673,822	-				+0.1
2,673,822	-				-0.7
2,673,823	+				-1.0
2,673,823	+				+0.5
2,673,824	-				-0.7
2,673,824	-				+0.1
2,673,824	-				-0.6
2,673,863	+		PP_2342	0.16	-1.7
2,673,864	-		PP_2342	0.16	+1.2
2,673,915	+		PP_2342	0.43	+0.1
2,673,915	+		PP_2342	0.43	+0.3
2,673,915	+		PP_2342	0.43	-0.7
2,673,915	+		PP_2342	0.43	+0.7
2,673,916	-				-0.2
2,673,973	+		PP_2342	0.72	+0.2
2,673,988	-		PP_2342	0.80	-0.9
2,673,988	-		PP_2342	0.80	+0.1
2,674,077	+				+0.3
2,674,221	+		PP_2343	0.28	-0.7
2,674,221	+		PP_2343	0.28	-0.1
2,674,221	+		PP_2343	0.28	+0.3
2,674,221	+		PP_2343	0.28	-0.7
2,674,229	+		PP_2343	0.29	+0.1
2,674,229	+		PP_2343	0.29	+0.5
2,674,230	-		PP_2343	0.29	-0.0
2,674,234	-		PP_2343	0.30	+0.5
2,674,234	-		PP_2343	0.30	+0.7
2,674,259	-		PP_2343	0.33	+0.8
2,674,342	+		PP_2343	0.44	+0.5
2,674,343	-		PP_2343	0.44	+0.4
2,674,343	-		PP_2343	0.44	+0.4
2,674,343	-		PP_2343	0.44	-0.5
2,674,449	+		PP_2343	0.59	-0.0
2,674,449	+		PP_2343	0.59	-0.7
2,674,449	+		PP_2343	0.59	-0.6
2,674,450	-		PP_2343	0.59	+0.2
2,674,453	+		PP_2343	0.59	+0.1
2,674,453	+		PP_2343	0.59	-0.1
2,674,453	+		PP_2343	0.59	+0.0
2,674,453	+		PP_2343	0.59	+0.2
2,674,453	+		PP_2343	0.59	-0.6
2,674,453	+		PP_2343	0.59	+0.1
2,674,454	-		PP_2343	0.60	-0.1
2,674,454	-		PP_2343	0.60	-1.4
2,674,460	-		PP_2343	0.60	-0.4
2,674,571	+		PP_2343	0.76	-0.0
2,674,571	+		PP_2343	0.76	+0.4
2,674,572	-		PP_2343	0.76	+0.7
2,674,581	-		PP_2343	0.77	-0.6
2,674,581	-		PP_2343	0.77	-1.0
2,674,610	+		PP_2343	0.81	-2.1
2,674,611	-		PP_2343	0.81	-2.5
2,674,923	-				-0.4
2,674,958	+				-0.3
2,674,958	+				-0.7
2,674,958	+				+0.1
2,674,959	-				+0.3
2,674,962	-				-0.2
2,675,037	+				+0.3
2,675,037	+				+0.6
2,675,038	-				-0.7
2,675,056	+				-0.3
2,675,057	-				+0.1
2,675,057	-				+1.7
2,675,146	+				+0.4
2,675,147	-				-0.2
2,675,236	+		PP_2344	0.17	+0.3
2,675,237	-		PP_2344	0.17	-0.1
2,675,237	-		PP_2344	0.17	+0.3
2,675,350	+		PP_2344	0.27	-0.7
2,675,350	+		PP_2344	0.27	-1.8
2,675,375	-		PP_2344	0.30	-0.6
2,675,392	+		PP_2344	0.31	-0.1
2,675,393	-		PP_2344	0.31	+0.5
2,675,393	-		PP_2344	0.31	+0.8
2,675,393	-		PP_2344	0.31	+0.8
2,675,525	-		PP_2344	0.44	-0.2