Strain Fitness in Pseudomonas putida KT2440 around PP_2330

Experiment: R2A with Fusaric 480 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 480 ug/mL
2,656,886	-		PP_2329	0.46	+0.8
2,657,031	+		PP_2329	0.57	+0.8
2,657,031	+		PP_2329	0.57	-1.1
2,657,031	+		PP_2329	0.57	-3.3
2,657,032	-		PP_2329	0.57	+0.6
2,657,040	-		PP_2329	0.57	-0.7
2,657,040	-		PP_2329	0.57	-1.6
2,657,062	-		PP_2329	0.59	-0.4
2,657,177	-		PP_2329	0.68	+0.7
2,657,235	+		PP_2329	0.72	-0.0
2,657,235	+		PP_2329	0.72	+0.7
2,657,235	+		PP_2329	0.72	+0.1
2,657,235	+		PP_2329	0.72	+1.0
2,657,235	+		PP_2329	0.72	-0.3
2,657,236	-		PP_2329	0.72	-0.5
2,657,236	-		PP_2329	0.72	-0.0
2,657,357	+		PP_2329	0.81	-0.4
2,657,358	-		PP_2329	0.81	-0.0
2,657,559	+				+0.2
2,657,581	-				-0.4
2,657,595	-				-0.3
2,657,595	-				-0.6
2,657,615	+				-0.7
2,657,615	+				-0.9
2,657,616	-				+0.2
2,657,651	-				+0.5
2,657,712	-				-0.4
2,657,817	-				+0.8
2,657,817	-				+0.1
2,658,044	+		PP_2330	0.23	-0.7
2,658,045	-		PP_2330	0.23	-1.5
2,658,046	+		PP_2330	0.23	-1.5
2,658,068	-		PP_2330	0.25	-3.0
2,658,283	-		PP_2330	0.47	-3.7
2,658,332	-		PP_2330	0.52	-1.1
2,658,410	-		PP_2330	0.60	-1.4
2,658,410	-		PP_2330	0.60	-2.3
2,658,579	-		PP_2330	0.77	-1.3
2,658,695	-		PP_2330	0.89	-0.8
2,658,713	-				-2.6
2,658,713	-				-1.2
2,658,713	-				-2.4
2,658,725	-				-2.8
2,658,725	-				-2.2
2,658,735	-				-0.2
2,658,930	+				-0.2
2,658,930	+				+0.3
2,658,931	-				-1.9
2,658,931	-				-2.3
2,659,163	+		PP_2331	0.24	-3.1
2,659,209	+		PP_2331	0.27	-1.2
2,659,209	+		PP_2331	0.27	-3.1
2,659,434	+		PP_2331	0.41	-3.4
2,659,435	-		PP_2331	0.41	-1.0
2,659,626	+		PP_2331	0.54	-2.3