Strain Fitness in Pseudomonas putida KT2440 around PP_2106

Experiment: R2A with Fusaric 480 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 480 ug/mL
2,402,463	+		PP_2104	0.27	+0.7
2,402,464	-		PP_2104	0.27	+1.1
2,402,481	+		PP_2104	0.31	-0.8
2,402,481	+		PP_2104	0.31	-0.9
2,402,481	+		PP_2104	0.31	-0.8
2,402,481	+		PP_2104	0.31	+0.2
2,402,481	+		PP_2104	0.31	+0.7
2,402,482	-		PP_2104	0.32	-0.5
2,402,482	-		PP_2104	0.32	-1.2
2,402,482	-		PP_2104	0.32	+0.6
2,402,503	+		PP_2104	0.37	+1.0
2,402,504	-		PP_2104	0.38	-0.3
2,402,829	+		PP_2105	0.26	+0.9
2,402,829	+		PP_2105	0.26	+0.1
2,402,830	-		PP_2105	0.26	+0.1
2,403,026	+		PP_2105	0.89	+0.0
2,403,027	-		PP_2105	0.89	-1.2
2,403,027	-		PP_2105	0.89	+0.7
2,403,089	+				+0.3
2,403,089	+				+0.4
2,403,090	-				-0.5
2,403,294	+				-0.1
2,403,368	+				+0.5
2,403,369	-				-0.3
2,403,574	+		PP_2106	0.17	+1.0
2,403,576	+		PP_2106	0.17	-0.4
2,403,576	+		PP_2106	0.17	+0.7
2,403,576	+		PP_2106	0.17	+0.5
2,403,577	-		PP_2106	0.17	+1.1
2,403,593	+		PP_2106	0.18	+0.3
2,403,808	+		PP_2106	0.36	+0.2
2,403,808	+		PP_2106	0.36	-0.1
2,403,820	-		PP_2106	0.37	+1.0
2,403,883	-		PP_2106	0.42	-0.3
2,404,166	-		PP_2106	0.66	+1.0
2,404,320	+				+1.3
2,404,321	-		PP_2106	0.78	+0.1
2,404,321	-		PP_2106	0.78	+0.6
2,404,478	+				+0.5
2,404,478	+				+0.7
2,404,479	-				+0.1
2,404,479	-				+0.1
2,404,567	+				-2.9
2,404,617	-				-0.2
2,404,621	+				-3.4
2,404,622	-				-0.5
2,404,634	-				+0.5
2,404,753	+		PP_2107	0.40	-1.8
2,404,754	-		PP_2107	0.41	+0.6
2,405,076	-		PP_2108	0.17	-0.6
2,405,113	+		PP_2108	0.25	-1.3
2,405,113	+		PP_2108	0.25	+1.2
2,405,114	-		PP_2108	0.25	-0.2
2,405,114	-		PP_2108	0.25	+0.7
2,405,114	-		PP_2108	0.25	+0.3
2,405,114	-		PP_2108	0.25	-1.2
2,405,114	-		PP_2108	0.25	-1.3
2,405,137	+		PP_2108	0.31	+0.4
2,405,137	+		PP_2108	0.31	+0.1
2,405,137	+		PP_2108	0.31	+0.3
2,405,466	+				-1.1
2,405,525	+				-1.6
2,405,526	-				-0.6