Strain Fitness in Pseudomonas putida KT2440 around PP_1417

Experiment: R2A with Fusaric 480 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 480 ug/mL
1,616,417	+		PP_1416	0.44	-0.4
1,616,417	+		PP_1416	0.44	+0.7
1,616,418	-		PP_1416	0.44	+0.3
1,616,538	+		PP_1416	0.52	+0.9
1,616,538	+		PP_1416	0.52	+0.0
1,616,813	+		PP_1416	0.71	-0.7
1,616,814	-		PP_1416	0.71	-0.1
1,616,814	-		PP_1416	0.71	+1.1
1,617,207	-				+0.1
1,617,242	+				+0.6
1,617,243	-				-0.8
1,617,243	-				+0.9
1,617,252	+				-0.2
1,617,561	+		PP_1417	0.62	-0.2
1,617,561	+		PP_1417	0.62	+0.3
1,617,561	+		PP_1417	0.62	+0.8
1,617,561	+		PP_1417	0.62	+1.6
1,617,562	-		PP_1417	0.62	+1.6
1,617,627	+		PP_1417	0.76	-1.7
1,617,628	-		PP_1417	0.76	+1.7
1,617,646	-		PP_1417	0.79	+0.5
1,617,646	-		PP_1417	0.79	-0.5
1,617,646	-		PP_1417	0.79	-0.5
1,617,804	+				-0.0
1,617,825	+				-0.9
1,617,826	-				-0.7
1,617,826	-				-0.3
1,617,826	-				+0.1
1,617,838	-				+0.3
1,617,919	+				-0.4
1,617,920	-				+0.3
1,617,955	+				+0.4
1,617,956	-				-1.4
1,617,956	-				+1.5
1,617,979	+				-0.8
1,617,979	+				+0.4
1,617,980	-				-0.6
1,617,980	-				-2.7
1,618,093	+		PP_1418	0.18	+0.8
1,618,093	+		PP_1418	0.18	+1.8
1,618,093	+		PP_1418	0.18	-0.5
1,618,123	+		PP_1418	0.21	+0.6
1,618,124	-		PP_1418	0.21	+0.5
1,618,348	+		PP_1418	0.44	-0.2
1,618,495	+		PP_1418	0.59	-1.0
1,618,496	-		PP_1418	0.59	+0.3
1,618,528	+		PP_1418	0.62	-0.4
1,618,528	+		PP_1418	0.62	+0.1
1,618,529	-		PP_1418	0.62	-1.2
1,618,602	-		PP_1418	0.70	-1.0
1,618,672	+		PP_1418	0.77	+0.7
1,618,673	-		PP_1418	0.77	+0.8
1,618,702	+		PP_1418	0.80	+0.6
1,618,702	+		PP_1418	0.80	-0.3
1,618,702	+		PP_1418	0.80	-0.4
1,618,702	+		PP_1418	0.80	+0.5
1,618,703	-		PP_1418	0.80	+0.4
1,618,703	-		PP_1418	0.80	-0.6
1,618,703	-		PP_1418	0.80	-1.0
1,618,703	-		PP_1418	0.80	-0.2
1,618,740	+		PP_1418	0.84	+0.1
1,618,740	+		PP_1418	0.84	-1.2
1,618,741	-		PP_1418	0.84	-0.5