Strain Fitness in Pseudomonas putida KT2440 around PP_1087

Experiment: R2A with Fusaric 480 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 480 ug/mL
1,245,593	+				+0.2
1,245,630	+				-0.0
1,245,671	-				-0.2
1,245,813	+		PP_1087	0.18	+0.7
1,245,814	-		PP_1087	0.18	+0.7
1,246,035	+		PP_1087	0.41	+0.6
1,246,035	+		PP_1087	0.41	+0.7
1,246,036	-		PP_1087	0.41	+0.5
1,246,054	+		PP_1087	0.43	-0.2
1,246,055	-		PP_1087	0.43	+0.3
1,246,055	-		PP_1087	0.43	+0.3
1,246,118	-		PP_1087	0.49	+0.7
1,246,118	-		PP_1087	0.49	+0.4
1,246,118	-		PP_1087	0.49	+0.0
1,246,126	+		PP_1087	0.50	+2.7
1,246,162	+		PP_1087	0.54	+0.0
1,246,163	-		PP_1087	0.54	+0.5
1,246,163	-		PP_1087	0.54	+1.3
1,246,255	+		PP_1087	0.64	+0.6
1,246,255	+		PP_1087	0.64	+0.1
1,246,255	+		PP_1087	0.64	+0.5
1,246,256	-		PP_1087	0.64	-0.9
1,246,256	-		PP_1087	0.64	+0.5
1,246,256	-		PP_1087	0.64	-2.2
1,246,327	-		PP_1087	0.71	+1.4
1,246,433	-		PP_1087	0.82	+0.5
1,246,847	-				+1.2
1,246,909	-				-0.8
1,246,949	-				-2.6
1,246,949	-				-0.2
1,246,993	-				-0.8
1,246,993	-				-0.8
1,246,993	-				-1.7
1,247,017	+				-0.2
1,247,017	+				-0.5
1,247,047	+				-2.0
1,247,047	+				-1.6
1,247,051	+				+0.0
1,247,051	+				-0.4
1,247,051	+				-0.5
1,247,051	+				-0.6
1,247,052	-				-1.1
1,247,052	-				-0.6
1,247,052	-				-0.8
1,247,052	-				-1.1
1,247,052	-				-0.0
1,247,150	+		PP_1088	0.15	-1.5
1,247,150	+		PP_1088	0.15	-1.0
1,247,150	+		PP_1088	0.15	-0.7
1,247,151	-		PP_1088	0.15	-0.4
1,247,151	-		PP_1088	0.15	+0.1
1,247,151	-		PP_1088	0.15	-3.3
1,247,151	-		PP_1088	0.15	-1.3
1,247,369	+		PP_1088	0.33	-1.0
1,247,369	+		PP_1088	0.33	-2.6
1,247,369	+		PP_1088	0.33	-1.8
1,247,370	-		PP_1088	0.33	-0.2
1,247,447	+		PP_1088	0.39	-0.7
1,247,447	+		PP_1088	0.39	-4.2
1,247,448	-		PP_1088	0.39	-2.3
1,247,448	-		PP_1088	0.39	-1.1
1,247,534	+		PP_1088	0.46	-1.4
1,247,535	-		PP_1088	0.46	-2.7
1,247,557	+		PP_1088	0.48	-2.6