Strain Fitness in Pseudomonas putida KT2440 around PP_0784

Experiment: R2A with Fusaric 480 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0782 and PP_0784 are separated by 342 nucleotidesPP_0784 and PP_0785 are separated by 44 nucleotides PP_0782: PP_0782 - conserved protein of unknown function, at 898,925 to 899,548 _0782 PP_0784: PP_0784 - conserved protein of unknown function, at 899,891 to 900,508 _0784 PP_0785: PP_0785 - putative cysZ protein, required for sulfate transport, at 900,553 to 901,281 _0785 Position (kb) 899 900 901Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 898.901 kb on - strandat 898.935 kb on + strandat 898.935 kb on + strandat 899.165 kb on + strand, within PP_0782at 899.165 kb on + strand, within PP_0782at 899.295 kb on + strand, within PP_0782at 899.296 kb on - strand, within PP_0782at 899.299 kb on + strand, within PP_0782at 899.392 kb on + strand, within PP_0782at 899.393 kb on - strand, within PP_0782at 899.409 kb on - strand, within PP_0782at 899.522 kb on + strandat 899.523 kb on - strandat 899.547 kb on - strandat 899.600 kb on + strandat 899.601 kb on - strandat 899.778 kb on - strandat 899.781 kb on + strandat 899.781 kb on + strandat 899.871 kb on - strandat 899.916 kb on + strandat 900.008 kb on + strand, within PP_0784at 900.036 kb on - strand, within PP_0784at 900.128 kb on - strand, within PP_0784at 900.131 kb on + strand, within PP_0784at 900.215 kb on - strand, within PP_0784at 900.323 kb on - strand, within PP_0784at 900.357 kb on + strand, within PP_0784at 900.358 kb on - strand, within PP_0784at 900.453 kb on + strandat 900.453 kb on + strandat 900.453 kb on + strandat 900.453 kb on + strandat 900.454 kb on - strandat 900.454 kb on - strandat 900.454 kb on - strandat 900.454 kb on - strandat 900.456 kb on + strandat 900.488 kb on + strandat 900.489 kb on - strandat 900.507 kb on - strandat 900.582 kb on + strandat 900.583 kb on - strandat 900.583 kb on - strandat 900.644 kb on + strand, within PP_0785at 900.746 kb on + strand, within PP_0785at 900.747 kb on - strand, within PP_0785at 900.896 kb on - strand, within PP_0785at 900.952 kb on + strand, within PP_0785at 900.952 kb on + strand, within PP_0785at 900.952 kb on + strand, within PP_0785at 900.952 kb on + strand, within PP_0785at 900.953 kb on - strand, within PP_0785at 900.953 kb on - strand, within PP_0785at 901.002 kb on + strand, within PP_0785at 901.002 kb on + strand, within PP_0785at 901.002 kb on + strand, within PP_0785at 901.073 kb on + strand, within PP_0785at 901.073 kb on + strand, within PP_0785at 901.074 kb on - strand, within PP_0785at 901.074 kb on - strand, within PP_0785at 901.074 kb on - strand, within PP_0785at 901.086 kb on + strand, within PP_0785at 901.087 kb on - strand, within PP_0785at 901.087 kb on - strand, within PP_0785at 901.151 kb on + strand, within PP_0785at 901.151 kb on + strand, within PP_0785at 901.250 kb on + strandat 901.251 kb on - strandat 901.251 kb on - strandat 901.283 kb on + strandat 901.283 kb on + strandat 901.283 kb on + strandat 901.284 kb on - strandat 901.284 kb on - strandat 901.318 kb on + strandat 901.370 kb on + strandat 901.370 kb on + strandat 901.371 kb on - strandat 901.371 kb on - strandat 901.371 kb on - strandat 901.395 kb on - strandat 901.395 kb on - strandat 901.413 kb on + strandat 901.424 kb on + strandat 901.425 kb on - strandat 901.425 kb on - strandat 901.425 kb on - strandat 901.425 kb on - strandat 901.425 kb on - strandat 901.425 kb on - strandat 901.454 kb on + strandat 901.454 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Fusaric 480 ug/mL
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898,901 - +1.0
898,935 + +0.7
898,935 + +0.3
899,165 + PP_0782 0.38 -1.5
899,165 + PP_0782 0.38 -1.2
899,295 + PP_0782 0.59 -0.6
899,296 - PP_0782 0.59 -0.2
899,299 + PP_0782 0.60 +0.0
899,392 + PP_0782 0.75 +0.4
899,393 - PP_0782 0.75 -1.0
899,409 - PP_0782 0.78 +0.9
899,522 + -0.4
899,523 - +0.1
899,547 - +1.2
899,600 + -0.9
899,601 - -0.1
899,778 - +1.6
899,781 + +0.4
899,781 + +0.4
899,871 - -0.0
899,916 + -0.5
900,008 + PP_0784 0.19 -0.1
900,036 - PP_0784 0.23 -1.6
900,128 - PP_0784 0.38 +1.1
900,131 + PP_0784 0.39 +2.1
900,215 - PP_0784 0.52 +0.9
900,323 - PP_0784 0.70 +0.0
900,357 + PP_0784 0.75 +0.7
900,358 - PP_0784 0.76 +0.6
900,453 + +0.1
900,453 + -0.1
900,453 + +1.6
900,453 + +0.3
900,454 - +0.1
900,454 - +1.6
900,454 - +0.6
900,454 - -1.2
900,456 + -0.2
900,488 + +0.3
900,489 - +0.1
900,507 - +0.5
900,582 + -1.0
900,583 - -1.1
900,583 - +0.4
900,644 + PP_0785 0.12 -1.7
900,746 + PP_0785 0.26 -0.9
900,747 - PP_0785 0.27 +0.1
900,896 - PP_0785 0.47 +0.2
900,952 + PP_0785 0.55 +0.7
900,952 + PP_0785 0.55 +0.0
900,952 + PP_0785 0.55 +0.2
900,952 + PP_0785 0.55 -1.0
900,953 - PP_0785 0.55 -0.2
900,953 - PP_0785 0.55 +0.2
901,002 + PP_0785 0.62 -0.2
901,002 + PP_0785 0.62 -1.1
901,002 + PP_0785 0.62 -1.0
901,073 + PP_0785 0.71 -0.3
901,073 + PP_0785 0.71 +1.3
901,074 - PP_0785 0.71 +0.2
901,074 - PP_0785 0.71 -1.5
901,074 - PP_0785 0.71 -0.2
901,086 + PP_0785 0.73 -1.2
901,087 - PP_0785 0.73 +0.7
901,087 - PP_0785 0.73 +0.7
901,151 + PP_0785 0.82 +0.6
901,151 + PP_0785 0.82 +0.3
901,250 + +1.4
901,251 - -0.1
901,251 - -2.0
901,283 + -1.2
901,283 + -0.0
901,283 + +0.1
901,284 - -1.3
901,284 - +0.2
901,318 + -0.0
901,370 + -0.9
901,370 + -1.2
901,371 - -1.4
901,371 - -0.9
901,371 - +0.1
901,395 - -1.3
901,395 - +0.8
901,413 + -3.2
901,424 + +0.1
901,425 - +0.1
901,425 - -1.0
901,425 - -1.7
901,425 - -2.1
901,425 - -2.0
901,425 - -0.5
901,454 + +0.8
901,454 + +0.5

Or see this region's nucleotide sequence