Strain Fitness in Pseudomonas putida KT2440 around PP_0261

Experiment: R2A with Fusaric 480 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0259 and PP_0260 are separated by 64 nucleotidesPP_0260 and PP_0261 are separated by 14 nucleotidesPP_0261 and PP_0262 are separated by 82 nucleotidesPP_0262 and PP_0263 overlap by 1 nucleotides PP_0259: PP_0259 - purine nucleotidase, at 313,878 to 314,540 _0259 PP_0260: PP_0260 - ADP-sugar pyrophosphorylase, at 314,605 to 315,171 _0260 PP_0261: PP_0261 - adenosine-3'(2'),5'-bisphosphate nucleotidase, at 315,186 to 315,986 _0261 PP_0262: PP_0262 - conserved protein of unknown function, at 316,069 to 316,524 _0262 PP_0263: PP_0263 - C4-dicarboxylate transport transcriptional regulatory protein, at 316,524 to 317,930 _0263 Position (kb) 315 316Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 314.247 kb on - strand, within PP_0259at 314.313 kb on + strand, within PP_0259at 314.313 kb on + strand, within PP_0259at 314.314 kb on - strand, within PP_0259at 314.314 kb on - strand, within PP_0259at 314.341 kb on + strand, within PP_0259at 314.410 kb on - strand, within PP_0259at 314.467 kb on + strand, within PP_0259at 314.468 kb on - strand, within PP_0259at 314.468 kb on - strand, within PP_0259at 314.572 kb on + strandat 314.572 kb on + strandat 314.572 kb on + strandat 314.572 kb on + strandat 314.573 kb on - strandat 314.573 kb on - strandat 314.574 kb on + strandat 314.574 kb on + strandat 314.574 kb on + strandat 314.574 kb on + strandat 314.574 kb on + strandat 314.575 kb on - strandat 314.575 kb on - strandat 314.575 kb on - strandat 314.575 kb on - strandat 314.575 kb on - strandat 314.575 kb on - strandat 314.575 kb on - strandat 314.577 kb on + strandat 314.624 kb on + strandat 314.675 kb on + strand, within PP_0260at 314.675 kb on + strand, within PP_0260at 314.710 kb on + strand, within PP_0260at 314.710 kb on + strand, within PP_0260at 314.710 kb on + strand, within PP_0260at 314.710 kb on + strand, within PP_0260at 314.711 kb on - strand, within PP_0260at 314.711 kb on - strand, within PP_0260at 314.711 kb on - strand, within PP_0260at 314.711 kb on - strand, within PP_0260at 314.800 kb on + strand, within PP_0260at 314.801 kb on - strand, within PP_0260at 314.821 kb on + strand, within PP_0260at 314.822 kb on - strand, within PP_0260at 314.822 kb on - strand, within PP_0260at 314.959 kb on + strand, within PP_0260at 314.960 kb on - strand, within PP_0260at 314.960 kb on - strand, within PP_0260at 314.960 kb on - strand, within PP_0260at 314.960 kb on - strand, within PP_0260at 315.167 kb on + strandat 315.167 kb on + strandat 315.167 kb on + strandat 315.167 kb on + strandat 315.167 kb on + strandat 315.167 kb on + strandat 315.167 kb on + strandat 315.168 kb on - strandat 315.301 kb on + strand, within PP_0261at 315.380 kb on + strand, within PP_0261at 315.380 kb on + strand, within PP_0261at 315.380 kb on + strand, within PP_0261at 315.381 kb on - strand, within PP_0261at 315.381 kb on - strand, within PP_0261at 315.381 kb on - strand, within PP_0261at 315.381 kb on - strand, within PP_0261at 315.550 kb on - strand, within PP_0261at 315.616 kb on + strand, within PP_0261at 315.616 kb on + strand, within PP_0261at 315.616 kb on + strand, within PP_0261at 315.617 kb on - strand, within PP_0261at 315.617 kb on - strand, within PP_0261at 315.825 kb on - strand, within PP_0261at 315.920 kb on + strandat 315.927 kb on + strandat 315.927 kb on + strandat 315.927 kb on + strandat 315.946 kb on + strandat 315.984 kb on + strandat 315.984 kb on + strandat 315.984 kb on + strandat 315.984 kb on + strandat 315.984 kb on + strandat 315.984 kb on + strandat 315.984 kb on + strandat 315.984 kb on + strandat 315.985 kb on - strandat 316.067 kb on + strandat 316.067 kb on + strandat 316.067 kb on + strandat 316.067 kb on + strandat 316.068 kb on - strandat 316.070 kb on + strandat 316.070 kb on + strandat 316.071 kb on - strandat 316.071 kb on - strandat 316.085 kb on + strandat 316.085 kb on + strandat 316.086 kb on - strandat 316.256 kb on + strand, within PP_0262at 316.284 kb on + strand, within PP_0262at 316.284 kb on + strand, within PP_0262at 316.284 kb on + strand, within PP_0262at 316.284 kb on + strand, within PP_0262at 316.285 kb on - strand, within PP_0262at 316.285 kb on - strand, within PP_0262at 316.285 kb on - strand, within PP_0262at 316.359 kb on - strand, within PP_0262at 316.815 kb on + strand, within PP_0263at 316.815 kb on + strand, within PP_0263at 316.941 kb on + strand, within PP_0263at 316.941 kb on + strand, within PP_0263at 316.941 kb on + strand, within PP_0263at 316.941 kb on + strand, within PP_0263at 316.941 kb on + strand, within PP_0263at 316.941 kb on + strand, within PP_0263at 316.942 kb on - strand, within PP_0263at 316.942 kb on - strand, within PP_0263at 316.942 kb on - strand, within PP_0263at 316.942 kb on - strand, within PP_0263at 316.942 kb on - strand, within PP_0263at 316.942 kb on - strand, within PP_0263at 316.942 kb on - strand, within PP_0263at 316.942 kb on - strand, within PP_0263at 316.942 kb on - strand, within PP_0263at 316.942 kb on - strand, within PP_0263at 316.942 kb on - strand, within PP_0263at 316.974 kb on - strand, within PP_0263

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Fusaric 480 ug/mL
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314,247 - PP_0259 0.56 -0.6
314,313 + PP_0259 0.66 -0.7
314,313 + PP_0259 0.66 -0.5
314,314 - PP_0259 0.66 +0.9
314,314 - PP_0259 0.66 +0.2
314,341 + PP_0259 0.70 +0.5
314,410 - PP_0259 0.80 +0.2
314,467 + PP_0259 0.89 +0.1
314,468 - PP_0259 0.89 +0.1
314,468 - PP_0259 0.89 -0.2
314,572 + +0.6
314,572 + -1.4
314,572 + +0.8
314,572 + -0.0
314,573 - +0.1
314,573 - +0.2
314,574 + -1.8
314,574 + +0.4
314,574 + +1.1
314,574 + -0.4
314,574 + +0.8
314,575 - -2.3
314,575 - -1.6
314,575 - +0.5
314,575 - +0.0
314,575 - -1.2
314,575 - +0.1
314,575 - -0.4
314,577 + -0.7
314,624 + +0.0
314,675 + PP_0260 0.12 +2.5
314,675 + PP_0260 0.12 +0.8
314,710 + PP_0260 0.19 -0.7
314,710 + PP_0260 0.19 +0.4
314,710 + PP_0260 0.19 +0.2
314,710 + PP_0260 0.19 -0.5
314,711 - PP_0260 0.19 +0.6
314,711 - PP_0260 0.19 +0.8
314,711 - PP_0260 0.19 +1.1
314,711 - PP_0260 0.19 +0.7
314,800 + PP_0260 0.34 +0.5
314,801 - PP_0260 0.35 +0.1
314,821 + PP_0260 0.38 +0.6
314,822 - PP_0260 0.38 -1.3
314,822 - PP_0260 0.38 +0.4
314,959 + PP_0260 0.62 +0.3
314,960 - PP_0260 0.63 +1.6
314,960 - PP_0260 0.63 +0.5
314,960 - PP_0260 0.63 +0.1
314,960 - PP_0260 0.63 +1.2
315,167 + -0.0
315,167 + -0.1
315,167 + +0.2
315,167 + -0.1
315,167 + +0.4
315,167 + -0.6
315,167 + -1.3
315,168 - -0.5
315,301 + PP_0261 0.14 +0.7
315,380 + PP_0261 0.24 +1.2
315,380 + PP_0261 0.24 +0.1
315,380 + PP_0261 0.24 +2.4
315,381 - PP_0261 0.24 +1.1
315,381 - PP_0261 0.24 +0.6
315,381 - PP_0261 0.24 +1.1
315,381 - PP_0261 0.24 -0.4
315,550 - PP_0261 0.45 -0.7
315,616 + PP_0261 0.54 +0.9
315,616 + PP_0261 0.54 +0.4
315,616 + PP_0261 0.54 +0.9
315,617 - PP_0261 0.54 +0.6
315,617 - PP_0261 0.54 +0.5
315,825 - PP_0261 0.80 +0.4
315,920 + -0.1
315,927 + +0.6
315,927 + +1.8
315,927 + +0.6
315,946 + +1.6
315,984 + -0.8
315,984 + -1.0
315,984 + +0.1
315,984 + -1.8
315,984 + +0.2
315,984 + +0.8
315,984 + +0.2
315,984 + +0.2
315,985 - +0.2
316,067 + -1.3
316,067 + -0.7
316,067 + -0.8
316,067 + +0.1
316,068 - -0.4
316,070 + -0.2
316,070 + +0.0
316,071 - +0.5
316,071 - -0.3
316,085 + -0.9
316,085 + +0.3
316,086 - +1.3
316,256 + PP_0262 0.41 +1.5
316,284 + PP_0262 0.47 -1.2
316,284 + PP_0262 0.47 +0.3
316,284 + PP_0262 0.47 +0.8
316,284 + PP_0262 0.47 -0.3
316,285 - PP_0262 0.47 -3.4
316,285 - PP_0262 0.47 -0.2
316,285 - PP_0262 0.47 -0.5
316,359 - PP_0262 0.64 -1.4
316,815 + PP_0263 0.21 +0.2
316,815 + PP_0263 0.21 -1.8
316,941 + PP_0263 0.30 +0.8
316,941 + PP_0263 0.30 -0.3
316,941 + PP_0263 0.30 +0.5
316,941 + PP_0263 0.30 +1.1
316,941 + PP_0263 0.30 +0.7
316,941 + PP_0263 0.30 -0.1
316,942 - PP_0263 0.30 +0.7
316,942 - PP_0263 0.30 +0.4
316,942 - PP_0263 0.30 -0.0
316,942 - PP_0263 0.30 +1.2
316,942 - PP_0263 0.30 -0.1
316,942 - PP_0263 0.30 +0.9
316,942 - PP_0263 0.30 +0.1
316,942 - PP_0263 0.30 +0.5
316,942 - PP_0263 0.30 +1.1
316,942 - PP_0263 0.30 +0.3
316,942 - PP_0263 0.30 -0.3
316,974 - PP_0263 0.32 +0.8

Or see this region's nucleotide sequence