Strain Fitness in Pseudomonas putida KT2440 around PP_5610

Experiment: R2A with Fusaric 480 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 480 ug/mL
4,178,740	-		PP_3677	0.60	-0.5
4,178,844	+		PP_3677	0.65	-0.9
4,179,042	-		PP_3677	0.74	+0.4
4,179,236	-		PP_3677	0.83	-0.2
4,179,279	+		PP_3677	0.85	-0.2
4,179,279	+		PP_3677	0.85	-0.6
4,179,318	+		PP_3677	0.86	-0.0
4,179,478	+				+0.2
4,179,745	-		PP_5610	0.27	+0.9
4,179,810	+		PP_5610	0.39	+1.1
4,180,109	+				-0.3
4,180,516	-		PP_3678	0.26	+1.2
4,180,696	-		PP_3678	0.38	+0.8
4,180,723	+		PP_3678	0.40	-0.5
4,180,723	+		PP_3678	0.40	-1.0
4,180,800	-		PP_3678	0.45	+0.2
4,180,819	-		PP_3678	0.47	+0.1
4,180,939	-		PP_3678	0.55	-0.1
4,181,046	+		PP_3678	0.62	-1.0
4,181,101	-		PP_3678	0.66	+0.1