Strain Fitness in Pseudomonas putida KT2440 around PP_5084

Experiment: R2A with Fusaric 480 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_5083 and PP_5084 are separated by 203 nucleotidesPP_5084 and PP_5085 are separated by 154 nucleotides PP_5083: PP_5083 - putative Type IV pili biogenesis protein PilM, at 5,804,327 to 5,805,208 _5083 PP_5084: PP_5084 - penicillin-insensitive transglycosylase/penicillin-sensitive transpeptidase, at 5,805,412 to 5,807,865 _5084 PP_5085: PP_5085 - malic enzyme B, at 5,808,020 to 5,809,288 _5085 Position (kb) 5805 5806 5807 5808Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 5804.412 kb on + strandat 5804.413 kb on - strandat 5804.450 kb on + strand, within PP_5083at 5804.519 kb on + strand, within PP_5083at 5804.790 kb on - strand, within PP_5083at 5804.950 kb on + strand, within PP_5083at 5805.158 kb on - strandat 5805.230 kb on + strandat 5805.230 kb on + strandat 5805.341 kb on + strandat 5805.341 kb on + strandat 5805.342 kb on - strandat 5805.343 kb on + strandat 5805.343 kb on + strandat 5805.343 kb on + strandat 5805.343 kb on + strandat 5805.343 kb on + strandat 5805.343 kb on + strandat 5805.344 kb on - strandat 5805.344 kb on - strandat 5805.344 kb on - strandat 5805.416 kb on + strandat 5805.417 kb on - strandat 5805.417 kb on - strandat 5805.417 kb on - strandat 5805.417 kb on - strandat 5805.417 kb on - strandat 5805.471 kb on - strandat 5805.496 kb on + strandat 5805.497 kb on - strandat 5805.497 kb on - strandat 5805.501 kb on + strandat 5805.566 kb on - strandat 5805.566 kb on - strandat 5805.753 kb on + strand, within PP_5084at 5805.935 kb on - strand, within PP_5084at 5805.935 kb on - strand, within PP_5084at 5805.961 kb on + strand, within PP_5084at 5805.961 kb on + strand, within PP_5084at 5805.961 kb on + strand, within PP_5084at 5805.961 kb on + strand, within PP_5084at 5805.962 kb on - strand, within PP_5084at 5806.102 kb on + strand, within PP_5084at 5806.102 kb on + strand, within PP_5084at 5806.102 kb on + strand, within PP_5084at 5806.102 kb on + strand, within PP_5084at 5806.102 kb on + strand, within PP_5084at 5806.103 kb on - strand, within PP_5084at 5806.103 kb on - strand, within PP_5084at 5806.103 kb on - strand, within PP_5084at 5806.103 kb on - strand, within PP_5084at 5806.103 kb on - strand, within PP_5084at 5806.133 kb on - strand, within PP_5084at 5806.168 kb on + strand, within PP_5084at 5806.168 kb on + strand, within PP_5084at 5806.169 kb on - strand, within PP_5084at 5806.169 kb on - strand, within PP_5084at 5806.201 kb on + strandat 5806.201 kb on + strand, within PP_5084at 5806.759 kb on + strandat 5806.759 kb on + strandat 5806.817 kb on - strand, within PP_5084at 5806.841 kb on - strand, within PP_5084at 5806.966 kb on + strand, within PP_5084at 5806.967 kb on - strand, within PP_5084at 5806.967 kb on - strand, within PP_5084at 5806.977 kb on + strand, within PP_5084at 5806.977 kb on + strand, within PP_5084at 5806.977 kb on + strand, within PP_5084at 5807.032 kb on + strand, within PP_5084at 5807.032 kb on + strand, within PP_5084at 5807.032 kb on + strand, within PP_5084at 5807.032 kb on + strand, within PP_5084at 5807.032 kb on + strand, within PP_5084at 5807.033 kb on - strand, within PP_5084at 5807.033 kb on - strand, within PP_5084at 5807.033 kb on - strand, within PP_5084at 5807.155 kb on + strand, within PP_5084at 5807.155 kb on + strand, within PP_5084at 5807.155 kb on + strand, within PP_5084at 5807.156 kb on - strand, within PP_5084at 5807.156 kb on - strand, within PP_5084at 5807.171 kb on - strand, within PP_5084at 5807.385 kb on + strand, within PP_5084at 5807.386 kb on - strand, within PP_5084at 5807.392 kb on + strand, within PP_5084at 5807.392 kb on + strand, within PP_5084at 5807.392 kb on + strand, within PP_5084at 5807.392 kb on + strand, within PP_5084at 5807.392 kb on + strand, within PP_5084at 5807.393 kb on - strand, within PP_5084at 5807.393 kb on - strand, within PP_5084at 5807.393 kb on - strand, within PP_5084at 5807.393 kb on - strand, within PP_5084at 5807.393 kb on - strand, within PP_5084at 5807.524 kb on + strand, within PP_5084at 5807.524 kb on + strand, within PP_5084at 5807.525 kb on - strand, within PP_5084at 5807.525 kb on - strand, within PP_5084at 5807.536 kb on + strand, within PP_5084at 5807.537 kb on - strand, within PP_5084at 5807.537 kb on - strand, within PP_5084at 5807.749 kb on + strandat 5807.863 kb on + strandat 5807.864 kb on - strandat 5807.864 kb on - strandat 5807.864 kb on - strandat 5808.003 kb on + strandat 5808.165 kb on + strand, within PP_5085at 5808.165 kb on + strand, within PP_5085at 5808.165 kb on + strand, within PP_5085at 5808.165 kb on + strand, within PP_5085at 5808.165 kb on + strand, within PP_5085at 5808.166 kb on - strand, within PP_5085at 5808.198 kb on + strand, within PP_5085at 5808.283 kb on + strand, within PP_5085at 5808.283 kb on + strand, within PP_5085at 5808.284 kb on - strand, within PP_5085at 5808.284 kb on - strand, within PP_5085at 5808.284 kb on - strand, within PP_5085at 5808.515 kb on + strand, within PP_5085at 5808.515 kb on + strand, within PP_5085at 5808.515 kb on + strand, within PP_5085at 5808.516 kb on - strand, within PP_5085at 5808.516 kb on - strand, within PP_5085at 5808.588 kb on + strand, within PP_5085at 5808.589 kb on - strand, within PP_5085at 5808.589 kb on - strand, within PP_5085at 5808.628 kb on + strand, within PP_5085at 5808.628 kb on + strand, within PP_5085at 5808.628 kb on + strand, within PP_5085at 5808.671 kb on + strand, within PP_5085at 5808.671 kb on + strand, within PP_5085at 5808.672 kb on - strand, within PP_5085at 5808.672 kb on - strand, within PP_5085at 5808.672 kb on - strand, within PP_5085at 5808.797 kb on - strand, within PP_5085at 5808.847 kb on + strand, within PP_5085

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Fusaric 480 ug/mL
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5,804,412 + +0.4
5,804,413 - -0.8
5,804,450 + PP_5083 0.14 -0.2
5,804,519 + PP_5083 0.22 +0.1
5,804,790 - PP_5083 0.52 +0.1
5,804,950 + PP_5083 0.71 +0.3
5,805,158 - -0.5
5,805,230 + -2.8
5,805,230 + +0.4
5,805,341 + -0.5
5,805,341 + +0.0
5,805,342 - -1.2
5,805,343 + -0.3
5,805,343 + -0.2
5,805,343 + +0.4
5,805,343 + -0.2
5,805,343 + +0.7
5,805,343 + -0.9
5,805,344 - -3.2
5,805,344 - -2.8
5,805,344 - -3.7
5,805,416 + -0.1
5,805,417 - -2.4
5,805,417 - -2.8
5,805,417 - -3.7
5,805,417 - -1.5
5,805,417 - -3.1
5,805,471 - -0.9
5,805,496 + -2.8
5,805,497 - -4.9
5,805,497 - -4.3
5,805,501 + -4.1
5,805,566 - -3.5
5,805,566 - -3.1
5,805,753 + PP_5084 0.14 -2.4
5,805,935 - PP_5084 0.21 -3.4
5,805,935 - PP_5084 0.21 -1.5
5,805,961 + PP_5084 0.22 -3.8
5,805,961 + PP_5084 0.22 -2.6
5,805,961 + PP_5084 0.22 -4.3
5,805,961 + PP_5084 0.22 -3.6
5,805,962 - PP_5084 0.22 -4.4
5,806,102 + PP_5084 0.28 -4.0
5,806,102 + PP_5084 0.28 -2.2
5,806,102 + PP_5084 0.28 -3.8
5,806,102 + PP_5084 0.28 -3.2
5,806,102 + PP_5084 0.28 -3.2
5,806,103 - PP_5084 0.28 -4.4
5,806,103 - PP_5084 0.28 -3.8
5,806,103 - PP_5084 0.28 -2.7
5,806,103 - PP_5084 0.28 -4.1
5,806,103 - PP_5084 0.28 -3.5
5,806,133 - PP_5084 0.29 -2.9
5,806,168 + PP_5084 0.31 -3.7
5,806,168 + PP_5084 0.31 -2.1
5,806,169 - PP_5084 0.31 -3.9
5,806,169 - PP_5084 0.31 -3.3
5,806,201 + -1.2
5,806,201 + PP_5084 0.32 -2.6
5,806,759 + -2.0
5,806,759 + -1.2
5,806,817 - PP_5084 0.57 -3.4
5,806,841 - PP_5084 0.58 -2.2
5,806,966 + PP_5084 0.63 -2.1
5,806,967 - PP_5084 0.63 -1.6
5,806,967 - PP_5084 0.63 -2.7
5,806,977 + PP_5084 0.64 -3.6
5,806,977 + PP_5084 0.64 -4.8
5,806,977 + PP_5084 0.64 -1.7
5,807,032 + PP_5084 0.66 -3.4
5,807,032 + PP_5084 0.66 -0.4
5,807,032 + PP_5084 0.66 -2.5
5,807,032 + PP_5084 0.66 -3.7
5,807,032 + PP_5084 0.66 -4.5
5,807,033 - PP_5084 0.66 -2.4
5,807,033 - PP_5084 0.66 -4.2
5,807,033 - PP_5084 0.66 -3.6
5,807,155 + PP_5084 0.71 -4.7
5,807,155 + PP_5084 0.71 -0.2
5,807,155 + PP_5084 0.71 -4.5
5,807,156 - PP_5084 0.71 -2.1
5,807,156 - PP_5084 0.71 -2.6
5,807,171 - PP_5084 0.72 -3.6
5,807,385 + PP_5084 0.80 -3.5
5,807,386 - PP_5084 0.80 -3.5
5,807,392 + PP_5084 0.81 -3.3
5,807,392 + PP_5084 0.81 -4.9
5,807,392 + PP_5084 0.81 -2.1
5,807,392 + PP_5084 0.81 -3.5
5,807,392 + PP_5084 0.81 -3.0
5,807,393 - PP_5084 0.81 -2.5
5,807,393 - PP_5084 0.81 -3.6
5,807,393 - PP_5084 0.81 -2.8
5,807,393 - PP_5084 0.81 -3.4
5,807,393 - PP_5084 0.81 -4.1
5,807,524 + PP_5084 0.86 -4.7
5,807,524 + PP_5084 0.86 -3.3
5,807,525 - PP_5084 0.86 -3.7
5,807,525 - PP_5084 0.86 -2.4
5,807,536 + PP_5084 0.87 -3.7
5,807,537 - PP_5084 0.87 -3.9
5,807,537 - PP_5084 0.87 -3.5
5,807,749 + -1.9
5,807,863 + -0.2
5,807,864 - +0.1
5,807,864 - +0.7
5,807,864 - +0.1
5,808,003 + +0.5
5,808,165 + PP_5085 0.11 +1.0
5,808,165 + PP_5085 0.11 +0.7
5,808,165 + PP_5085 0.11 +0.6
5,808,165 + PP_5085 0.11 +0.4
5,808,165 + PP_5085 0.11 +0.1
5,808,166 - PP_5085 0.12 -2.1
5,808,198 + PP_5085 0.14 +0.7
5,808,283 + PP_5085 0.21 +1.4
5,808,283 + PP_5085 0.21 +0.5
5,808,284 - PP_5085 0.21 -1.4
5,808,284 - PP_5085 0.21 -0.1
5,808,284 - PP_5085 0.21 -0.2
5,808,515 + PP_5085 0.39 -0.0
5,808,515 + PP_5085 0.39 -0.0
5,808,515 + PP_5085 0.39 -0.1
5,808,516 - PP_5085 0.39 -0.0
5,808,516 - PP_5085 0.39 -2.0
5,808,588 + PP_5085 0.45 -0.1
5,808,589 - PP_5085 0.45 -0.2
5,808,589 - PP_5085 0.45 +0.1
5,808,628 + PP_5085 0.48 -0.4
5,808,628 + PP_5085 0.48 +0.9
5,808,628 + PP_5085 0.48 +0.5
5,808,671 + PP_5085 0.51 -0.1
5,808,671 + PP_5085 0.51 +0.5
5,808,672 - PP_5085 0.51 -0.4
5,808,672 - PP_5085 0.51 -1.0
5,808,672 - PP_5085 0.51 -1.8
5,808,797 - PP_5085 0.61 -1.4
5,808,847 + PP_5085 0.65 -1.7

Or see this region's nucleotide sequence