Strain Fitness in Pseudomonas putida KT2440 around PP_4751

Experiment: R2A with Fusaric 480 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 480 ug/mL
5,405,665	+		PP_4749	0.54	+0.2
5,405,666	-		PP_4749	0.54	-0.4
5,405,752	+		PP_4749	0.67	-0.9
5,405,752	+		PP_4749	0.67	-0.4
5,405,753	-		PP_4749	0.67	+0.5
5,405,753	-		PP_4749	0.67	+1.2
5,405,753	-		PP_4749	0.67	+0.1
5,406,042	+		PP_4750	0.12	+0.0
5,406,042	+		PP_4750	0.12	-0.1
5,406,174	+		PP_4750	0.32	+0.7
5,406,174	+		PP_4750	0.32	+0.1
5,406,175	-		PP_4750	0.33	-1.2
5,406,175	-		PP_4750	0.33	-0.2
5,406,175	-		PP_4750	0.33	+0.6
5,406,200	-		PP_4750	0.36	+0.1
5,406,253	+		PP_4750	0.45	+1.0
5,406,253	+		PP_4750	0.45	-2.9
5,406,253	+		PP_4750	0.45	-0.1
5,406,254	-		PP_4750	0.45	+0.6
5,406,261	+		PP_4750	0.46	+0.0
5,406,310	-		PP_4750	0.54	+0.7
5,406,323	-		PP_4750	0.56	-2.3
5,406,323	-		PP_4750	0.56	+0.1
5,406,323	-		PP_4750	0.56	+0.6
5,406,382	+		PP_4750	0.65	-0.1
5,406,382	+		PP_4750	0.65	-3.5
5,406,383	-		PP_4750	0.65	+1.0
5,406,383	-		PP_4750	0.65	+0.2
5,406,383	-		PP_4750	0.65	+1.1
5,406,383	-		PP_4750	0.65	-1.0
5,406,384	+		PP_4750	0.65	+0.6
5,406,384	+		PP_4750	0.65	+0.3
5,406,385	-		PP_4750	0.65	+0.7
5,406,385	-		PP_4750	0.65	-1.6
5,406,527	+		PP_4750	0.87	+0.1
5,406,572	+				+0.5
5,406,573	-				+0.6
5,406,777	+		PP_4751	0.21	-0.1
5,406,777	+		PP_4751	0.21	+0.6
5,406,778	-		PP_4751	0.21	+0.5
5,406,904	-		PP_4751	0.37	+0.8
5,406,938	+		PP_4751	0.41	+0.2
5,406,939	-		PP_4751	0.41	+1.0
5,407,095	+		PP_4751	0.60	+1.1
5,407,095	+		PP_4751	0.60	-0.6
5,407,095	+		PP_4751	0.60	+0.7
5,407,096	-		PP_4751	0.60	+1.7
5,407,096	-		PP_4751	0.60	-0.2
5,407,096	-		PP_4751	0.60	-0.2
5,407,224	+		PP_4751	0.76	+0.2
5,407,323	+		PP_4751	0.88	+0.5
5,407,542	+				-0.5
5,407,543	-				-1.6
5,407,615	-		PP_4752	0.14	-0.5
5,407,629	+		PP_4752	0.15	+0.2
5,407,668	+		PP_4752	0.18	+0.1
5,407,668	+		PP_4752	0.18	-0.2
5,407,669	-		PP_4752	0.18	+0.6
5,407,669	-		PP_4752	0.18	+0.9
5,408,328	+		PP_4752	0.69	-0.0
5,408,328	+		PP_4752	0.69	+1.3
5,408,329	-		PP_4752	0.69	-0.5
5,408,329	-		PP_4752	0.69	+0.5