Experiment: R2A with Fusaric 480 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_3904 and PP_3905 are separated by 8 nucleotides PP_3905 and PP_3906 are separated by 19 nucleotides PP_3906 and PP_3907 overlap by 4 nucleotides PP_3907 and PP_3908 are separated by 81 nucleotides PP_3908 and PP_3909 are separated by 13 nucleotides
PP_3904: PP_3904 - conserved protein of unknown function, at 4,416,845 to 4,417,099
_3904
PP_3905: PP_3905 - Transcriptional regulator, LuxR family, at 4,417,108 to 4,417,659
_3905
PP_3906: PP_3906 - conserved protein of unknown function, at 4,417,679 to 4,417,948
_3906
PP_3907: PP_3907 - conserved protein of unknown function, at 4,417,945 to 4,418,403
_3907
PP_3908: PP_3908 - conserved protein of unknown function, at 4,418,485 to 4,418,835
_3908
PP_3909: PP_3909 - conserved protein of unknown function, at 4,418,849 to 4,419,127
_3909
Position (kb) 4417
4418 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4416.706 kb on - strand at 4416.717 kb on + strand at 4416.718 kb on - strand at 4416.745 kb on + strand at 4416.776 kb on + strand at 4416.777 kb on - strand at 4416.777 kb on - strand at 4416.777 kb on - strand at 4416.847 kb on - strand at 4416.878 kb on - strand, within PP_3904 at 4416.891 kb on - strand, within PP_3904 at 4417.001 kb on - strand, within PP_3904 at 4417.078 kb on + strand at 4417.094 kb on + strand at 4417.095 kb on - strand at 4417.113 kb on + strand at 4417.134 kb on + strand at 4417.134 kb on + strand at 4417.134 kb on + strand at 4417.134 kb on + strand at 4417.135 kb on - strand at 4417.358 kb on + strand, within PP_3905 at 4417.648 kb on + strand at 4417.649 kb on - strand at 4417.877 kb on + strand, within PP_3906 at 4417.878 kb on - strand, within PP_3906 at 4417.878 kb on - strand, within PP_3906 at 4417.878 kb on - strand, within PP_3906 at 4418.093 kb on + strand, within PP_3907 at 4418.093 kb on + strand, within PP_3907 at 4418.093 kb on + strand, within PP_3907 at 4418.094 kb on - strand, within PP_3907 at 4418.094 kb on - strand, within PP_3907 at 4418.143 kb on + strand, within PP_3907 at 4418.143 kb on + strand, within PP_3907 at 4418.143 kb on + strand, within PP_3907 at 4418.143 kb on + strand, within PP_3907 at 4418.144 kb on - strand, within PP_3907 at 4418.183 kb on - strand, within PP_3907 at 4418.219 kb on - strand, within PP_3907 at 4418.219 kb on - strand, within PP_3907 at 4418.219 kb on - strand, within PP_3907 at 4418.257 kb on + strand, within PP_3907 at 4418.257 kb on + strand, within PP_3907 at 4418.257 kb on + strand, within PP_3907 at 4418.258 kb on - strand, within PP_3907 at 4418.259 kb on + strand, within PP_3907 at 4418.322 kb on + strand, within PP_3907 at 4418.477 kb on + strand at 4418.718 kb on + strand, within PP_3908 at 4418.719 kb on - strand, within PP_3908 at 4418.743 kb on + strand, within PP_3908 at 4418.797 kb on - strand, within PP_3908 at 4418.797 kb on - strand, within PP_3908 at 4418.819 kb on + strand at 4418.851 kb on - strand at 4418.903 kb on + strand, within PP_3909 at 4418.903 kb on + strand, within PP_3909 at 4418.904 kb on - strand, within PP_3909 at 4418.904 kb on - strand, within PP_3909 at 4418.904 kb on - strand, within PP_3909
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Fusaric 480 ug/mL remove 4,416,706 - +1.0 4,416,717 + -3.6 4,416,718 - -1.2 4,416,745 + -0.6 4,416,776 + -0.5 4,416,777 - -0.1 4,416,777 - +0.2 4,416,777 - -0.8 4,416,847 - -1.6 4,416,878 - PP_3904 0.13 +1.0 4,416,891 - PP_3904 0.18 +0.2 4,417,001 - PP_3904 0.61 -0.1 4,417,078 + -0.4 4,417,094 + +2.1 4,417,095 - -0.0 4,417,113 + -3.4 4,417,134 + -2.2 4,417,134 + +0.6 4,417,134 + +0.9 4,417,134 + -3.4 4,417,135 - +0.6 4,417,358 + PP_3905 0.45 +0.8 4,417,648 + +0.4 4,417,649 - +0.7 4,417,877 + PP_3906 0.73 -0.1 4,417,878 - PP_3906 0.74 +1.2 4,417,878 - PP_3906 0.74 +0.3 4,417,878 - PP_3906 0.74 +1.0 4,418,093 + PP_3907 0.32 +1.0 4,418,093 + PP_3907 0.32 +1.2 4,418,093 + PP_3907 0.32 -0.2 4,418,094 - PP_3907 0.32 +1.4 4,418,094 - PP_3907 0.32 +0.6 4,418,143 + PP_3907 0.43 -0.9 4,418,143 + PP_3907 0.43 -1.5 4,418,143 + PP_3907 0.43 -0.2 4,418,143 + PP_3907 0.43 +0.8 4,418,144 - PP_3907 0.43 -0.8 4,418,183 - PP_3907 0.52 +0.3 4,418,219 - PP_3907 0.60 -1.0 4,418,219 - PP_3907 0.60 +0.5 4,418,219 - PP_3907 0.60 +1.0 4,418,257 + PP_3907 0.68 +1.0 4,418,257 + PP_3907 0.68 -0.2 4,418,257 + PP_3907 0.68 +0.6 4,418,258 - PP_3907 0.68 -0.0 4,418,259 + PP_3907 0.68 -0.8 4,418,322 + PP_3907 0.82 -0.6 4,418,477 + +0.2 4,418,718 + PP_3908 0.66 -1.1 4,418,719 - PP_3908 0.67 +0.3 4,418,743 + PP_3908 0.74 +0.7 4,418,797 - PP_3908 0.89 -0.5 4,418,797 - PP_3908 0.89 +0.2 4,418,819 + -0.2 4,418,851 - -0.8 4,418,903 + PP_3909 0.19 +0.3 4,418,903 + PP_3909 0.19 -0.3 4,418,904 - PP_3909 0.20 -0.6 4,418,904 - PP_3909 0.20 +0.1 4,418,904 - PP_3909 0.20 +1.0
Or see this region's nucleotide sequence