Strain Fitness in Pseudomonas putida KT2440 around PP_3074

Experiment: R2A with Fusaric 480 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 480 ug/mL
3,456,301	-		PP_3072	0.66	+0.4
3,456,302	+		PP_3072	0.66	-0.4
3,456,302	+		PP_3072	0.66	+0.9
3,456,596	+		PP_3073	0.10	-0.8
3,456,597	-		PP_3073	0.10	+0.4
3,456,749	+		PP_3073	0.30	-1.4
3,456,750	-		PP_3073	0.30	+0.2
3,456,750	-		PP_3073	0.30	-1.5
3,456,750	-		PP_3073	0.30	-0.1
3,456,834	+		PP_3073	0.41	-0.4
3,456,834	+		PP_3073	0.41	-1.1
3,456,835	-		PP_3073	0.41	-0.7
3,456,835	-		PP_3073	0.41	+1.1
3,457,021	+		PP_3073	0.65	+0.3
3,457,217	+				-4.2
3,457,218	-				-4.5
3,457,300	+				-0.2
3,457,301	-				-0.2
3,457,318	+				+1.3
3,457,384	+				-1.3
3,457,384	+				-3.4
3,457,384	+				+0.6
3,457,384	+				-0.4
3,457,385	-				+0.8
3,457,385	-				-2.5
3,457,385	-				+0.3
3,457,706	-		PP_3074	0.29	+0.6
3,457,778	+		PP_3074	0.34	+0.4
3,457,779	-		PP_3074	0.34	+1.1
3,458,102	-		PP_3074	0.58	+0.2
3,458,321	-		PP_3074	0.73	+0.3
3,458,359	+		PP_3074	0.76	+0.4
3,458,363	+		PP_3074	0.76	+1.3
3,458,363	+		PP_3074	0.76	+1.2
3,458,364	-		PP_3074	0.77	-0.1
3,458,364	-		PP_3074	0.77	+0.5
3,458,382	+		PP_3074	0.78	+1.0
3,458,382	+		PP_3074	0.78	+0.8
3,458,507	-		PP_3074	0.87	+0.4
3,458,507	-		PP_3074	0.87	+0.1
3,458,623	-				+0.8
3,458,623	-				+1.1
3,458,759	-				-0.0
3,458,838	+				-0.7
3,459,059	-				-1.2
3,459,267	+		PP_3075	0.24	-0.8
3,459,268	-		PP_3075	0.24	-0.8
3,459,346	+		PP_3075	0.30	-1.4
3,459,349	+		PP_3075	0.30	-1.1
3,459,349	+		PP_3075	0.30	-0.0