Strain Fitness in Pseudomonas putida KT2440 around PP_2892

Experiment: R2A with Fusaric 480 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 480 ug/mL
3,288,195	+				+0.3
3,288,326	+		PP_2891	0.12	+0.7
3,288,354	-		PP_2891	0.16	-0.2
3,288,354	-		PP_2891	0.16	+1.4
3,288,354	-		PP_2891	0.16	+0.2
3,288,386	+		PP_2891	0.20	-1.6
3,288,386	+		PP_2891	0.20	+0.9
3,288,387	-		PP_2891	0.21	-0.5
3,288,387	-		PP_2891	0.21	-1.0
3,288,388	+		PP_2891	0.21	-0.9
3,288,388	+		PP_2891	0.21	+0.7
3,288,389	-		PP_2891	0.21	-0.5
3,288,389	-		PP_2891	0.21	-0.3
3,288,464	+		PP_2891	0.32	-0.8
3,288,608	-		PP_2891	0.53	-0.5
3,288,617	+		PP_2891	0.54	+0.6
3,288,626	+		PP_2891	0.56	+0.1
3,288,732	+		PP_2891	0.71	-1.0
3,288,732	+		PP_2891	0.71	+0.1
3,288,796	+		PP_2891	0.81	+0.4
3,288,806	+		PP_2891	0.82	+0.3
3,288,806	+		PP_2891	0.82	+0.3
3,288,806	+		PP_2891	0.82	+2.1
3,288,807	-		PP_2891	0.82	-0.3
3,288,807	-		PP_2891	0.82	+0.9
3,288,818	+		PP_2891	0.84	+1.1
3,288,852	+		PP_2891	0.89	+0.1
3,288,853	-		PP_2891	0.89	+1.3
3,288,853	-		PP_2891	0.89	+0.3
3,288,859	-				+0.8
3,288,859	-				+1.3
3,288,892	+				-0.7
3,288,966	-				+1.6
3,288,984	+				+0.3
3,288,984	+				+0.8
3,288,985	-				+0.9
3,288,985	-				+0.1
3,288,985	-				+0.7
3,289,012	+				-0.1
3,289,107	+				+1.5
3,289,107	+				+0.5
3,289,107	+				-0.1
3,289,107	+				+0.7
3,289,109	+				+1.1
3,289,110	-				+0.9
3,289,110	-				+0.6
3,289,110	-				+0.6
3,289,110	-				+0.8
3,289,110	-				-1.2
3,289,110	-				+0.3
3,289,111	+				+0.6
3,289,111	+				+0.7
3,289,111	+				+0.1
3,289,111	+				+0.4
3,289,111	+				+1.1
3,289,112	-				+0.7
3,289,112	-				+0.3
3,289,112	-				+0.0
3,289,112	-				+0.2
3,289,112	-				+1.2
3,289,147	+		PP_2892	0.10	+0.5
3,289,148	-		PP_2892	0.10	+0.6
3,289,204	-		PP_2892	0.13	+0.1
3,289,207	-		PP_2892	0.14	+0.5
3,289,410	+		PP_2892	0.25	+0.2
3,289,411	-		PP_2892	0.25	+0.4
3,289,479	-		PP_2892	0.29	-1.4
3,289,641	+		PP_2892	0.38	+0.7
3,289,641	+		PP_2892	0.38	+0.8
3,289,641	+		PP_2892	0.38	+0.1
3,289,878	+		PP_2892	0.52	+0.7
3,289,878	+		PP_2892	0.52	+1.0
3,289,878	+		PP_2892	0.52	+1.2
3,289,878	+		PP_2892	0.52	-0.1
3,289,878	+		PP_2892	0.52	-0.0
3,289,879	-		PP_2892	0.52	+0.9
3,289,879	-		PP_2892	0.52	+0.8
3,289,879	-		PP_2892	0.52	-0.9
3,289,929	+		PP_2892	0.55	+1.1
3,289,930	-		PP_2892	0.55	+0.0
3,290,281	+		PP_2892	0.75	+0.9
3,290,281	+		PP_2892	0.75	+0.7
3,290,282	-		PP_2892	0.75	+0.4
3,290,282	-		PP_2892	0.75	+1.2
3,290,335	+		PP_2892	0.78	+0.4
3,290,335	+		PP_2892	0.78	+0.6
3,290,336	-		PP_2892	0.78	+1.0
3,290,434	-		PP_2892	0.84	+0.2
3,290,484	+		PP_2892	0.86	+0.1
3,290,509	-		PP_2892	0.88	+1.3
3,290,514	+		PP_2892	0.88	-0.5
3,290,515	-		PP_2892	0.88	+1.2
3,290,898	+				+0.2
3,290,926	-				+0.4
3,291,237	+		PP_2893	0.14	+0.9
3,291,237	+		PP_2893	0.14	+0.2
3,291,238	-		PP_2893	0.14	+0.6
3,291,238	-		PP_2893	0.14	+1.3
3,291,238	-		PP_2893	0.14	+0.7
3,291,273	+		PP_2893	0.15	+0.7
3,291,279	+		PP_2893	0.15	+0.2
3,291,390	-		PP_2893	0.18	+1.0
3,291,390	-		PP_2893	0.18	+2.2
3,291,552	-		PP_2893	0.23	+0.3
3,291,552	-		PP_2893	0.23	+0.9
3,291,553	+		PP_2893	0.23	-0.7
3,291,554	-		PP_2893	0.23	+0.6