Strain Fitness in Pseudomonas putida KT2440 around PP_2658

Experiment: R2A with Fusaric 480 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 480 ug/mL
3,044,693	+		PP_2657	0.24	-2.0
3,044,693	+				+0.4
3,044,694	-		PP_2657	0.24	-0.5
3,044,694	-		PP_2657	0.24	-0.8
3,044,694	-		PP_2657	0.24	+0.9
3,044,694	-		PP_2657	0.24	+0.1
3,044,698	+		PP_2657	0.25	-0.5
3,044,699	-		PP_2657	0.25	-0.1
3,044,719	+		PP_2657	0.27	+1.1
3,044,719	+		PP_2657	0.27	-0.5
3,044,727	-		PP_2657	0.28	-0.1
3,044,888	+		PP_2657	0.44	+0.0
3,044,888	+		PP_2657	0.44	+0.1
3,044,888	+		PP_2657	0.44	+0.4
3,044,888	+		PP_2657	0.44	-0.0
3,044,888	+		PP_2657	0.44	-1.1
3,044,888	+		PP_2657	0.44	-3.5
3,044,889	-		PP_2657	0.44	+0.4
3,044,889	-		PP_2657	0.44	-1.0
3,044,889	-		PP_2657	0.44	+0.7
3,044,889	-		PP_2657	0.44	-0.5
3,045,063	+		PP_2657	0.62	-0.3
3,045,064	-		PP_2657	0.62	+0.3
3,045,064	-		PP_2657	0.62	-1.2
3,045,064	-		PP_2657	0.62	+0.4
3,045,068	-		PP_2657	0.63	+1.0
3,045,100	+		PP_2657	0.66	-0.9
3,045,100	+		PP_2657	0.66	-0.1
3,045,103	+		PP_2657	0.66	+0.1
3,045,104	-		PP_2657	0.67	-0.1
3,045,336	-				+0.1
3,045,348	+				-0.3
3,045,402	-				-1.5
3,045,402	-				-0.1
3,045,416	-				-3.4
3,045,503	+				+0.9
3,045,565	+		PP_2658	0.16	-1.3
3,045,566	-		PP_2658	0.16	-0.3
3,045,663	+		PP_2658	0.27	-0.7
3,046,126	+		PP_2658	0.79	-2.6
3,046,126	+		PP_2658	0.79	-1.3
3,046,193	-		PP_2658	0.86	-1.6
3,046,260	-				-1.1
3,046,260	-				-0.4
3,046,260	-				+0.8
3,046,312	+				+0.0
3,046,312	+				-0.4
3,046,313	-				-0.6
3,046,342	+				+0.3
3,046,342	+				+0.2
3,046,419	+		PP_2659	0.12	+0.3
3,046,420	-		PP_2659	0.13	-0.3
3,046,424	+		PP_2659	0.13	-0.3
3,046,536	-		PP_2659	0.26	-2.3
3,046,536	-		PP_2659	0.26	-2.0
3,046,599	+				+0.9
3,046,624	+		PP_2659	0.37	-0.2
3,046,624	+		PP_2659	0.37	-0.6
3,046,625	-		PP_2659	0.37	-0.6
3,046,635	+		PP_2659	0.38	-0.1
3,046,635	+		PP_2659	0.38	+0.7
3,046,636	-		PP_2659	0.38	-0.1
3,046,636	-		PP_2659	0.38	-0.2
3,046,962	+		PP_2659	0.77	-0.7
3,046,963	-		PP_2659	0.77	-0.2
3,046,963	-		PP_2659	0.77	+1.3
3,046,986	-		PP_2659	0.80	-0.6
3,047,040	-		PP_2659	0.86	-1.1
3,047,065	-		PP_2659	0.89	-0.9
3,047,215	+				-3.5
3,047,225	+				-0.1
3,047,243	+				-1.2
3,047,244	-				-1.6