Strain Fitness in Pseudomonas putida KT2440 around PP_2378

Experiment: R2A with Fusaric 480 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 480 ug/mL
2,717,952	+		PP_2377	0.17	+0.2
2,717,952	+		PP_2377	0.17	+0.9
2,717,952	+		PP_2377	0.17	+0.2
2,717,953	-		PP_2377	0.17	+0.4
2,717,953	-		PP_2377	0.17	-0.3
2,717,953	-		PP_2377	0.17	-2.7
2,717,953	-		PP_2377	0.17	+0.0
2,717,953	-		PP_2377	0.17	+0.0
2,718,028	-		PP_2377	0.24	-0.5
2,718,028	-		PP_2377	0.24	-0.3
2,718,036	+		PP_2377	0.25	-0.1
2,718,056	-		PP_2377	0.27	-0.5
2,718,061	+		PP_2377	0.27	+0.6
2,718,156	+		PP_2377	0.36	-0.5
2,718,156	+				+3.0
2,718,156	+		PP_2377	0.36	-0.4
2,718,156	+		PP_2377	0.36	+0.2
2,718,157	-		PP_2377	0.36	-0.6
2,718,157	-		PP_2377	0.36	+0.2
2,718,213	+		PP_2377	0.42	-1.1
2,718,214	-		PP_2377	0.42	+0.6
2,718,331	-		PP_2377	0.53	-0.7
2,718,349	-		PP_2377	0.55	+0.6
2,718,379	+		PP_2377	0.58	+0.3
2,718,379	+		PP_2377	0.58	-0.2
2,718,379	+		PP_2377	0.58	-0.2
2,718,379	+		PP_2377	0.58	+0.6
2,718,380	-		PP_2377	0.58	-0.5
2,718,380	-		PP_2377	0.58	+0.4
2,718,456	+		PP_2377	0.65	+0.6
2,718,585	+		PP_2377	0.78	+0.3
2,718,586	-		PP_2377	0.78	+0.5
2,718,595	-		PP_2377	0.79	-1.5
2,718,595	-		PP_2377	0.79	+0.1
2,718,595	-		PP_2377	0.79	-1.0
2,718,601	+		PP_2377	0.79	+0.1
2,718,601	+		PP_2377	0.79	+0.3
2,718,601	+		PP_2377	0.79	+1.2
2,718,602	-		PP_2377	0.79	-0.5
2,718,602	-		PP_2377	0.79	-0.5
2,718,602	-		PP_2377	0.79	+0.3
2,718,618	+		PP_2377	0.81	+0.0
2,718,618	+		PP_2377	0.81	+0.4
2,718,618	+		PP_2377	0.81	-1.0
2,718,618	+		PP_2377	0.81	-0.3
2,718,619	-		PP_2377	0.81	+0.7
2,718,697	+		PP_2377	0.89	+0.5
2,718,697	+		PP_2377	0.89	+0.1
2,718,698	-		PP_2377	0.89	+0.6
2,718,698	-		PP_2377	0.89	-0.3
2,718,714	+				-0.1
2,718,739	-				+0.7
2,718,842	+				-0.8
2,718,843	-				-0.5
2,718,872	-				-0.8
2,718,882	+				-1.9
2,718,882	+				-1.2
2,718,882	+				-1.5
2,718,883	-				-1.4
2,718,883	-				-2.1
2,718,884	+				-0.1
2,718,884	+				+2.1
2,718,885	-				-1.9
2,718,885	-				-1.9
2,719,010	-		PP_2378	0.23	-0.3
2,719,092	-				-0.2
2,719,121	-		PP_2378	0.42	-1.4
2,719,212	+		PP_2378	0.58	-1.9
2,719,212	+		PP_2378	0.58	-1.6
2,719,213	-		PP_2378	0.58	-1.5
2,719,219	+				+0.8
2,719,219	+				-1.5
2,719,219	+				+0.6
2,719,220	-		PP_2378	0.59	+1.8
2,719,220	-				-2.1
2,719,220	-		PP_2378	0.59	-1.7
2,719,220	-		PP_2378	0.59	+1.3
2,719,226	+		PP_2378	0.60	-2.7
2,719,227	-				-0.4
2,719,393	-		PP_2378	0.89	+0.5
2,719,450	+				+0.7
2,719,450	+				-0.7
2,719,453	+				+0.8
2,719,641	+				-0.3
2,719,641	+				+0.6
2,719,757	+		PP_2379	0.17	-2.9
2,719,845	-		PP_2379	0.31	-2.2
2,720,022	-		PP_2379	0.60	-2.6
2,720,109	-		PP_2379	0.75	-2.2
2,720,135	+		PP_2379	0.79	-2.6
2,720,159	-		PP_2379	0.83	-1.6
2,720,159	-		PP_2379	0.83	-1.4
2,720,162	+		PP_2379	0.83	-2.6
2,720,162	+		PP_2379	0.83	-3.4
2,720,162	+		PP_2379	0.83	-3.2
2,720,163	-		PP_2379	0.83	-2.4
2,720,163	-		PP_2379	0.83	-1.1
2,720,163	-		PP_2379	0.83	-3.7
2,720,163	-		PP_2379	0.83	+0.3
2,720,163	-		PP_2379	0.83	-2.9
2,720,169	-		PP_2379	0.84	-1.0
2,720,169	-		PP_2379	0.84	+1.5
2,720,304	+				-1.8
2,720,305	-				-1.4
2,720,305	-				-0.0