Strain Fitness in Pseudomonas putida KT2440 around PP_2376

Experiment: R2A with Fusaric 480 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 480 ug/mL
2,714,325	+		PP_2375	0.79	-1.4
2,714,326	-		PP_2375	0.79	-1.2
2,714,326	-		PP_2375	0.79	-0.3
2,714,326	-		PP_2375	0.79	+0.1
2,714,326	-		PP_2375	0.79	-0.1
2,714,432	-		PP_2375	0.82	+0.5
2,714,607	+		PP_2375	0.87	+1.0
2,714,690	-		PP_2375	0.89	-0.5
2,714,793	+				-0.1
2,714,883	+				-0.4
2,714,942	-				-0.7
2,715,019	+				-1.5
2,715,019	+				+0.8
2,715,019	+				-0.2
2,715,020	-				+0.7
2,715,020	-				-0.0
2,715,020	-				-0.6
2,715,020	-				+0.8
2,715,020	-				+0.8
2,715,022	+				-1.5
2,715,022	+				-0.0
2,715,023	-				-0.0
2,715,023	-				+0.0
2,715,103	+				-0.5
2,715,103	+				-0.6
2,715,103	+				-1.1
2,715,104	-				+0.3
2,715,104	-				+0.1
2,715,104	-				+0.2
2,715,104	-				-0.7
2,715,110	+				-0.2
2,715,111	-				+0.3
2,715,147	-				-0.5
2,715,298	-				-0.3
2,715,298	-				+0.0
2,715,369	+				+1.0
2,715,370	-				-0.1
2,715,505	+				+0.9
2,715,506	-				+0.7
2,715,550	+		PP_2376	0.11	+0.6
2,715,669	+		PP_2376	0.17	+0.6
2,715,670	-		PP_2376	0.17	-0.2
2,715,755	-		PP_2376	0.20	-0.4
2,715,818	-		PP_2376	0.23	+0.0
2,715,862	+		PP_2376	0.25	-0.6
2,715,968	-		PP_2376	0.30	+0.2
2,716,069	-		PP_2376	0.34	-0.7
2,716,114	+		PP_2376	0.36	-0.3
2,716,114	+		PP_2376	0.36	+0.8
2,716,114	+		PP_2376	0.36	+0.3
2,716,115	-		PP_2376	0.36	-2.1
2,716,115	-		PP_2376	0.36	+0.2
2,716,115	-		PP_2376	0.36	-0.2
2,716,115	-		PP_2376	0.36	-0.4
2,716,115	-		PP_2376	0.36	+0.6
2,716,213	+		PP_2376	0.40	-0.3
2,716,213	+		PP_2376	0.40	-0.6
2,716,214	-		PP_2376	0.40	-0.7
2,716,339	+		PP_2376	0.46	+0.1
2,716,340	-		PP_2376	0.46	+1.1
2,716,340	-		PP_2376	0.46	-0.5
2,716,448	-		PP_2376	0.50	+0.3
2,716,466	-		PP_2376	0.51	-0.1
2,716,568	-		PP_2376	0.56	+0.1
2,716,756	+		PP_2376	0.64	+0.1
2,716,757	-		PP_2376	0.64	-0.2
2,716,760	-		PP_2376	0.64	-0.2
2,716,787	-		PP_2376	0.65	+0.8
2,716,822	+		PP_2376	0.67	+0.2
2,716,910	-		PP_2376	0.71	-0.2
2,716,945	+		PP_2376	0.72	+0.4
2,716,945	+		PP_2376	0.72	-0.3
2,716,946	-		PP_2376	0.72	+0.1
2,716,946	-		PP_2376	0.72	-0.2
2,716,946	-		PP_2376	0.72	+0.3
2,716,946	-		PP_2376	0.72	+0.0
2,717,242	+		PP_2376	0.85	-0.4
2,717,300	-		PP_2376	0.88	-0.5
2,717,420	-				-0.3
2,717,420	-				-0.1
2,717,521	+				+0.2
2,717,521	+				-0.2
2,717,522	-				+0.6
2,717,522	-				+0.1
2,717,522	-				+0.1
2,717,522	-				+0.2
2,717,524	-				+0.5
2,717,524	-				-0.3
2,717,610	+				+0.6
2,717,610	+				+0.8
2,717,611	-				+0.7
2,717,693	+				+1.0
2,717,702	+				-1.5
2,717,703	-				-1.4
2,717,703	-				-2.5
2,717,788	-				+0.9
2,717,788	-				-1.0
2,717,952	+		PP_2377	0.17	+0.2
2,717,952	+		PP_2377	0.17	+0.9
2,717,952	+		PP_2377	0.17	+0.2
2,717,953	-		PP_2377	0.17	+0.4
2,717,953	-		PP_2377	0.17	-0.3
2,717,953	-		PP_2377	0.17	-2.7
2,717,953	-		PP_2377	0.17	+0.0
2,717,953	-		PP_2377	0.17	+0.0
2,718,028	-		PP_2377	0.24	-0.5
2,718,028	-		PP_2377	0.24	-0.3
2,718,036	+		PP_2377	0.25	-0.1
2,718,056	-		PP_2377	0.27	-0.5
2,718,061	+		PP_2377	0.27	+0.6
2,718,156	+		PP_2377	0.36	-0.5
2,718,156	+				+3.0
2,718,156	+		PP_2377	0.36	-0.4
2,718,156	+		PP_2377	0.36	+0.2
2,718,157	-		PP_2377	0.36	-0.6
2,718,157	-		PP_2377	0.36	+0.2
2,718,213	+		PP_2377	0.42	-1.1
2,718,214	-		PP_2377	0.42	+0.6
2,718,331	-		PP_2377	0.53	-0.7
2,718,349	-		PP_2377	0.55	+0.6
2,718,379	+		PP_2377	0.58	+0.3
2,718,379	+		PP_2377	0.58	-0.2
2,718,379	+		PP_2377	0.58	-0.2
2,718,379	+		PP_2377	0.58	+0.6
2,718,380	-		PP_2377	0.58	-0.5
2,718,380	-		PP_2377	0.58	+0.4
2,718,456	+		PP_2377	0.65	+0.6
2,718,585	+		PP_2377	0.78	+0.3
2,718,586	-		PP_2377	0.78	+0.5