Strain Fitness in Pseudomonas putida KT2440 around PP_1683

Experiment: R2A with Fusaric 480 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 480 ug/mL
1,876,585	+		PP_1682	0.34	+0.4
1,876,618	-		PP_1682	0.37	-0.7
1,876,657	+		PP_1682	0.40	+0.9
1,876,658	-		PP_1682	0.40	+0.2
1,876,738	+		PP_1682	0.47	-0.6
1,876,739	-		PP_1682	0.47	+1.1
1,876,849	+		PP_1682	0.56	-1.3
1,876,850	-		PP_1682	0.56	+0.1
1,876,850	-		PP_1682	0.56	-0.1
1,876,910	-		PP_1682	0.61	-0.1
1,876,910	-		PP_1682	0.61	+0.3
1,876,924	+		PP_1682	0.62	-0.3
1,876,924	+		PP_1682	0.62	-0.6
1,876,924	+		PP_1682	0.62	-0.1
1,876,924	+		PP_1682	0.62	-0.4
1,876,924	+		PP_1682	0.62	+0.0
1,876,924	+		PP_1682	0.62	-1.0
1,876,924	+		PP_1682	0.62	+0.1
1,876,924	+		PP_1682	0.62	+0.6
1,876,924	+		PP_1682	0.62	+0.3
1,876,924	+		PP_1682	0.62	+0.5
1,876,924	+		PP_1682	0.62	+0.2
1,876,924	+		PP_1682	0.62	+0.0
1,876,925	-		PP_1682	0.63	-0.8
1,876,925	-				-0.8
1,876,925	-		PP_1682	0.63	-0.6
1,876,925	-		PP_1682	0.63	-0.0
1,876,925	-		PP_1682	0.63	-0.2
1,877,045	-		PP_1682	0.73	+0.5
1,877,149	+		PP_1682	0.81	-0.3
1,877,162	+		PP_1682	0.83	+1.1
1,877,162	+		PP_1682	0.83	+1.1
1,877,162	+		PP_1682	0.83	+1.6
1,877,163	-		PP_1682	0.83	-1.3
1,877,163	-		PP_1682	0.83	-0.1
1,877,163	-		PP_1682	0.83	+0.3
1,877,163	-		PP_1682	0.83	-0.8
1,877,203	+		PP_1682	0.86	-0.3
1,877,203	+		PP_1682	0.86	-1.0
1,877,203	+		PP_1682	0.86	+0.6
1,877,204	-		PP_1682	0.86	-0.5
1,877,204	-		PP_1682	0.86	+0.6
1,877,204	-		PP_1682	0.86	-0.5
1,877,204	-		PP_1682	0.86	+0.4
1,877,204	-		PP_1682	0.86	-0.1
1,877,204	-		PP_1682	0.86	-2.6
1,877,204	-		PP_1682	0.86	+0.3
1,877,205	+		PP_1682	0.86	+0.0
1,877,206	-		PP_1682	0.86	-1.2
1,877,206	-		PP_1682	0.86	-0.7
1,877,239	+		PP_1682	0.89	-0.9
1,877,240	-		PP_1682	0.89	-0.8
1,877,417	+				-0.5
1,877,418	-				-0.3
1,877,420	-				+0.7
1,877,454	-				+0.1
1,877,493	+				+0.6
1,877,616	-		PP_1683	0.46	+0.3
1,877,659	+		PP_1683	0.57	+0.3
1,877,718	-		PP_1683	0.71	+1.3
1,877,890	-				-1.0
1,877,950	-				-0.4
1,877,971	-				-0.1
1,878,149	+		PP_1684	0.22	+1.3
1,878,150	-				-0.4
1,878,408	+		PP_1684	0.43	+0.2
1,878,579	+		PP_1684	0.57	-0.8
1,878,579	+		PP_1684	0.57	-0.5
1,878,606	-		PP_1684	0.60	-0.1
1,878,606	-		PP_1684	0.60	+0.0
1,878,744	-		PP_1684	0.71	+0.4
1,878,744	-		PP_1684	0.71	-3.4
1,878,806	+		PP_1684	0.76	+0.4
1,878,807	-		PP_1684	0.76	-0.1
1,878,807	-		PP_1684	0.76	-0.0
1,878,807	-		PP_1684	0.76	+0.2
1,878,832	-		PP_1684	0.78	+0.2
1,878,832	-		PP_1684	0.78	-1.2