Strain Fitness in Pseudomonas putida KT2440 around PP_0878

Experiment: R2A with Fusaric 480 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 480 ug/mL
1,017,098	+				+0.6
1,017,143	-				-0.5
1,017,143	-				+1.0
1,017,190	-				-1.4
1,017,190	-				+0.6
1,017,274	+				-0.3
1,017,329	+				-0.9
1,017,329	+				+0.8
1,017,371	-				-0.1
1,017,432	+		PP_5461	0.10	-0.1
1,017,433	-		PP_5461	0.11	+0.0
1,017,433	-		PP_5461	0.11	+0.1
1,017,489	+		PP_5461	0.22	+0.8
1,017,489	+		PP_5461	0.22	+0.2
1,017,491	+		PP_5461	0.23	-0.6
1,017,491	+		PP_5461	0.23	-1.7
1,017,492	-		PP_5461	0.23	-1.2
1,017,492	-		PP_5461	0.23	+0.6
1,017,527	+		PP_5461	0.30	+0.8
1,017,547	+		PP_5461	0.34	+0.0
1,017,551	+		PP_5461	0.35	+0.5
1,017,551	+		PP_5461	0.35	+0.3
1,017,551	+		PP_5461	0.35	-1.7
1,017,552	-		PP_5461	0.35	-0.8
1,017,563	+		PP_5461	0.38	+0.1
1,017,563	+		PP_5461	0.38	-0.5
1,017,564	-		PP_5461	0.38	-0.0
1,017,575	-		PP_5461	0.40	+1.1
1,017,584	-		PP_5461	0.42	+1.3
1,017,584	-		PP_5461	0.42	-0.1
1,017,605	+		PP_5461	0.46	+0.3
1,017,605	+		PP_5461	0.46	-1.6
1,017,605	+				-0.6
1,017,605	+		PP_5461	0.46	-0.6
1,017,605	+		PP_5461	0.46	-0.5
1,017,605	+		PP_5461	0.46	+0.8
1,017,605	+		PP_5461	0.46	+0.1
1,017,606	-		PP_5461	0.47	-0.3
1,017,606	-		PP_5461	0.47	-0.3
1,017,606	-		PP_5461	0.47	-0.7
1,017,606	-		PP_5461	0.47	-0.3
1,017,635	-		PP_5461	0.53	-0.3
1,017,635	-		PP_5461	0.53	+0.3
1,017,658	-		PP_5461	0.57	-1.3
1,017,676	-		PP_5461	0.61	+0.6
1,017,708	+		PP_5461	0.68	+1.0
1,017,765	-		PP_5461	0.80	-0.4
1,017,894	-				+0.7
1,017,897	+				-0.4
1,017,902	+				-0.2
1,017,902	+				-1.0
1,017,903	-				-0.4
1,018,086	+				-1.0
1,018,087	-				+1.0
1,018,094	-				+0.0
1,018,094	-				-0.3
1,018,112	-				+1.9
1,018,133	+				+1.1
1,018,134	-				+1.5
1,018,183	+				+0.2
1,018,251	-		PP_0878	0.16	+0.9
1,018,315	+		PP_0878	0.23	+0.9
1,018,316	-		PP_0878	0.23	+1.1
1,018,316	-		PP_0878	0.23	+0.9
1,018,316	-		PP_0878	0.23	-0.0
1,018,316	-		PP_0878	0.23	-0.6
1,018,336	+		PP_0878	0.25	+0.2
1,018,336	+		PP_0878	0.25	+0.8
1,018,336	+		PP_0878	0.25	-0.4
1,018,337	-		PP_0878	0.25	+1.5
1,018,379	-		PP_0878	0.30	+1.2
1,018,379	-		PP_0878	0.30	+2.4
1,018,390	-		PP_0878	0.31	+0.8
1,018,390	-		PP_0878	0.31	-0.8
1,018,442	-		PP_0878	0.36	-0.3
1,018,621	+		PP_0878	0.55	+0.5
1,018,622	-		PP_0878	0.55	+0.7
1,019,021	-				+1.1
1,019,153	+				-1.4
1,019,154	-				-0.3
1,019,157	+		PP_0879	0.10	+0.7
1,019,157	+		PP_0879	0.10	+0.9
1,019,286	+		PP_0879	0.23	-0.1
1,019,349	+		PP_0879	0.30	-0.9
1,019,349	+		PP_0879	0.30	+0.5
1,019,349	+		PP_0879	0.30	+0.2
1,019,350	-		PP_0879	0.30	-0.2
1,019,350	-		PP_0879	0.30	+0.6
1,019,708	+		PP_0879	0.67	+1.3
1,019,716	-		PP_0879	0.68	-0.1
1,019,809	+		PP_0879	0.77	-0.2
1,019,809	+		PP_0879	0.77	-1.3
1,019,810	-		PP_0879	0.77	+1.2
1,019,810	-		PP_0879	0.77	+1.0
1,019,810	-		PP_0879	0.77	-0.3
1,019,963	+				+0.5
1,019,963	+				+1.7