Strain Fitness in Pseudomonas putida KT2440 around PP_0640

Experiment: R2A with Fusaric 480 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_5449 and PP_0639 are separated by 199 nucleotidesPP_0639 and PP_0640 overlap by 4 nucleotidesPP_0640 and PP_5450 are separated by 143 nucleotides PP_5449: PP_5449 - conserved exported protein of unknown function, at 747,948 to 748,766 _5449 PP_0639: PP_0639 - conserved protein of unknown function, at 748,966 to 749,682 _0639 PP_0640: PP_0640 - conserved protein of unknown function, at 749,679 to 750,863 _0640 PP_5450: PP_5450 - exported protein of unknown function, at 751,007 to 751,606 _5450 Position (kb) 749 750 751Strain fitness (log2 ratio) -2 -1 0 1 2 3at 748.738 kb on - strandat 748.773 kb on - strandat 748.812 kb on + strandat 748.812 kb on + strandat 748.879 kb on + strandat 748.880 kb on - strandat 749.101 kb on - strand, within PP_0639at 749.141 kb on + strand, within PP_0639at 749.239 kb on - strand, within PP_0639at 749.279 kb on - strand, within PP_0639at 749.308 kb on + strand, within PP_0639at 749.309 kb on - strand, within PP_0639at 749.309 kb on - strand, within PP_0639at 749.315 kb on - strand, within PP_0639at 749.355 kb on + strand, within PP_0639at 749.421 kb on - strand, within PP_0639at 749.652 kb on - strandat 749.652 kb on - strandat 749.704 kb on + strandat 750.454 kb on - strand, within PP_0640at 750.492 kb on - strand, within PP_0640at 750.593 kb on + strand, within PP_0640at 750.616 kb on + strand, within PP_0640at 750.617 kb on - strand, within PP_0640at 750.658 kb on - strand, within PP_0640at 750.841 kb on + strandat 750.915 kb on + strandat 750.916 kb on - strandat 750.916 kb on - strandat 750.927 kb on + strandat 750.933 kb on - strandat 750.937 kb on + strandat 750.938 kb on - strandat 750.938 kb on - strandat 750.938 kb on - strandat 750.950 kb on + strandat 750.950 kb on + strandat 750.950 kb on + strandat 750.951 kb on - strandat 750.994 kb on + strandat 750.994 kb on + strandat 751.004 kb on + strandat 751.008 kb on + strandat 751.134 kb on + strand, within PP_5450at 751.134 kb on + strand, within PP_5450at 751.134 kb on + strand, within PP_5450at 751.134 kb on + strand, within PP_5450at 751.135 kb on - strand, within PP_5450at 751.145 kb on + strand, within PP_5450at 751.145 kb on + strand, within PP_5450at 751.277 kb on - strand, within PP_5450at 751.284 kb on - strand, within PP_5450at 751.372 kb on + strand, within PP_5450at 751.372 kb on + strand, within PP_5450at 751.373 kb on - strand, within PP_5450at 751.373 kb on - strand, within PP_5450at 751.373 kb on - strandat 751.392 kb on - strand, within PP_5450at 751.402 kb on + strand, within PP_5450at 751.403 kb on - strand, within PP_5450at 751.476 kb on - strand, within PP_5450at 751.480 kb on - strand, within PP_5450at 751.480 kb on - strand, within PP_5450at 751.480 kb on - strand, within PP_5450at 751.489 kb on - strand, within PP_5450at 751.513 kb on + strand, within PP_5450at 751.555 kb on + strandat 751.556 kb on - strandat 751.556 kb on - strandat 751.556 kb on - strandat 751.580 kb on + strandat 751.609 kb on - strandat 751.609 kb on - strandat 751.621 kb on + strandat 751.622 kb on - strandat 751.647 kb on + strandat 751.647 kb on + strandat 751.648 kb on - strandat 751.648 kb on - strandat 751.752 kb on - strandat 751.770 kb on + strandat 751.770 kb on + strandat 751.771 kb on - strandat 751.771 kb on - strandat 751.797 kb on - strandat 751.829 kb on + strandat 751.830 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Fusaric 480 ug/mL
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748,738 - -0.7
748,773 - +1.3
748,812 + +1.2
748,812 + -0.2
748,879 + +0.6
748,880 - -0.2
749,101 - PP_0639 0.19 -0.2
749,141 + PP_0639 0.24 +0.6
749,239 - PP_0639 0.38 -0.9
749,279 - PP_0639 0.44 -1.1
749,308 + PP_0639 0.48 +0.3
749,309 - PP_0639 0.48 -0.7
749,309 - PP_0639 0.48 +0.1
749,315 - PP_0639 0.49 +0.3
749,355 + PP_0639 0.54 -0.0
749,421 - PP_0639 0.63 +0.1
749,652 - +0.0
749,652 - +0.6
749,704 + +0.7
750,454 - PP_0640 0.65 +0.5
750,492 - PP_0640 0.69 +1.0
750,593 + PP_0640 0.77 +0.4
750,616 + PP_0640 0.79 +0.4
750,617 - PP_0640 0.79 -1.9
750,658 - PP_0640 0.83 +2.3
750,841 + +0.8
750,915 + +0.2
750,916 - -1.8
750,916 - -0.6
750,927 + -0.8
750,933 - -2.0
750,937 + +0.4
750,938 - -1.1
750,938 - -2.1
750,938 - -1.6
750,950 + +3.7
750,950 + +0.2
750,950 + +0.1
750,951 - -0.0
750,994 + +0.0
750,994 + -0.4
751,004 + +0.3
751,008 + +1.5
751,134 + PP_5450 0.21 -1.0
751,134 + PP_5450 0.21 -1.2
751,134 + PP_5450 0.21 +0.3
751,134 + PP_5450 0.21 +0.7
751,135 - PP_5450 0.21 -0.8
751,145 + PP_5450 0.23 +1.6
751,145 + PP_5450 0.23 -0.2
751,277 - PP_5450 0.45 +0.1
751,284 - PP_5450 0.46 +1.0
751,372 + PP_5450 0.61 -0.3
751,372 + PP_5450 0.61 +0.1
751,373 - PP_5450 0.61 +0.4
751,373 - PP_5450 0.61 +0.5
751,373 - -1.3
751,392 - PP_5450 0.64 -1.0
751,402 + PP_5450 0.66 -0.2
751,403 - PP_5450 0.66 +1.6
751,476 - PP_5450 0.78 +1.3
751,480 - PP_5450 0.79 +0.2
751,480 - PP_5450 0.79 -0.3
751,480 - PP_5450 0.79 -0.7
751,489 - PP_5450 0.80 +0.9
751,513 + PP_5450 0.84 +0.4
751,555 + -0.0
751,556 - -0.9
751,556 - -1.4
751,556 - +0.0
751,580 + +1.0
751,609 - -1.9
751,609 - -1.0
751,621 + -0.1
751,622 - -0.9
751,647 + -0.7
751,647 + +0.2
751,648 - +0.8
751,648 - -0.4
751,752 - +0.3
751,770 + -0.3
751,770 + +0.4
751,771 - +0.2
751,771 - -0.7
751,797 - -1.0
751,829 + +0.2
751,830 - -0.5

Or see this region's nucleotide sequence