Experiment: R2A with Fusaric 480 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0586 and PP_0587 are separated by 52 nucleotides PP_0587 and PP_0588 are separated by 145 nucleotides PP_0588 and PP_0589 are separated by 107 nucleotides PP_0589 and PP_5446 are separated by 4 nucleotides PP_5446 and PP_0590 are separated by 450 nucleotides
PP_0586: PP_0586 - cadmium translocating P-type ATPase, at 683,847 to 686,246
_0586
PP_0587: PP_0587 - conserved exported protein of unknown function, at 686,299 to 686,685
_0587
PP_0588: PP_0588 - putative copper-binding chaperone, at 686,831 to 687,028
_0588
PP_0589: PP_0589 - Bcr/CflA family multidrug resistance transporter, at 687,136 to 688,317
_0589
PP_5446: PP_5446 - protein of unknown function, at 688,322 to 688,504
_5446
PP_0590: PP_0590 - Transcriptional regulator, ArsR family, at 688,955 to 689,668
_0590
Position (kb) 687
688
689 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 686.227 kb on + strand at 686.227 kb on + strand at 686.227 kb on + strand at 686.227 kb on + strand at 686.228 kb on - strand at 686.228 kb on - strand at 686.228 kb on - strand at 686.303 kb on + strand at 686.336 kb on + strand at 686.336 kb on + strand at 686.358 kb on - strand, within PP_0587 at 686.410 kb on + strand, within PP_0587 at 686.410 kb on + strand, within PP_0587 at 686.411 kb on - strand, within PP_0587 at 686.411 kb on - strand, within PP_0587 at 686.411 kb on - strand, within PP_0587 at 686.412 kb on + strand at 686.412 kb on + strand, within PP_0587 at 686.412 kb on + strand, within PP_0587 at 686.412 kb on + strand, within PP_0587 at 686.412 kb on + strand, within PP_0587 at 686.412 kb on + strand, within PP_0587 at 686.413 kb on - strand, within PP_0587 at 686.538 kb on - strand, within PP_0587 at 686.593 kb on + strand, within PP_0587 at 686.600 kb on + strand, within PP_0587 at 686.601 kb on - strand, within PP_0587 at 686.601 kb on - strand, within PP_0587 at 686.824 kb on - strand at 686.824 kb on - strand at 686.847 kb on + strand at 686.847 kb on + strand at 686.847 kb on + strand at 686.848 kb on - strand at 687.009 kb on - strand at 687.098 kb on + strand at 687.117 kb on - strand at 687.125 kb on - strand at 687.202 kb on + strand at 687.202 kb on + strand at 687.202 kb on + strand at 687.203 kb on - strand at 687.278 kb on - strand at 687.278 kb on - strand, within PP_0589 at 687.294 kb on + strand, within PP_0589 at 687.311 kb on - strand, within PP_0589 at 687.363 kb on + strand, within PP_0589 at 687.397 kb on + strand, within PP_0589 at 687.693 kb on + strand, within PP_0589 at 687.693 kb on + strand, within PP_0589 at 687.693 kb on + strand, within PP_0589 at 687.693 kb on + strand, within PP_0589 at 687.693 kb on + strand, within PP_0589 at 687.693 kb on + strand, within PP_0589 at 687.694 kb on - strand, within PP_0589 at 687.808 kb on + strand, within PP_0589 at 687.808 kb on + strand, within PP_0589 at 687.811 kb on - strand, within PP_0589 at 687.844 kb on + strand, within PP_0589 at 687.866 kb on - strand at 687.883 kb on - strand, within PP_0589 at 687.900 kb on + strand, within PP_0589 at 687.980 kb on - strand, within PP_0589 at 687.980 kb on - strand, within PP_0589 at 688.065 kb on + strand, within PP_0589 at 688.065 kb on + strand, within PP_0589 at 688.175 kb on + strand, within PP_0589 at 688.176 kb on - strand, within PP_0589 at 688.176 kb on - strand, within PP_0589 at 688.206 kb on - strand at 688.206 kb on - strand at 688.451 kb on + strand, within PP_5446 at 688.452 kb on - strand, within PP_5446 at 688.452 kb on - strand, within PP_5446 at 688.473 kb on + strand, within PP_5446 at 688.473 kb on + strand, within PP_5446 at 688.473 kb on + strand, within PP_5446 at 688.473 kb on + strand, within PP_5446 at 688.473 kb on + strand, within PP_5446 at 688.473 kb on + strand, within PP_5446 at 688.474 kb on - strand, within PP_5446 at 688.474 kb on - strand, within PP_5446 at 688.474 kb on - strand, within PP_5446 at 688.502 kb on + strand at 688.502 kb on + strand at 688.503 kb on - strand at 688.503 kb on - strand at 688.555 kb on + strand at 688.555 kb on + strand at 688.555 kb on + strand at 688.555 kb on + strand at 688.587 kb on - strand at 688.639 kb on - strand at 688.793 kb on + strand at 688.793 kb on + strand at 688.793 kb on + strand at 688.793 kb on + strand at 688.817 kb on + strand at 688.817 kb on + strand at 688.818 kb on - strand at 688.859 kb on + strand at 688.860 kb on - strand at 688.860 kb on - strand at 688.860 kb on - strand at 688.861 kb on + strand at 688.946 kb on + strand at 688.946 kb on + strand at 688.946 kb on + strand at 688.946 kb on + strand at 688.946 kb on + strand at 688.947 kb on - strand at 688.948 kb on + strand at 688.948 kb on + strand at 688.948 kb on + strand at 688.948 kb on + strand at 688.948 kb on + strand at 688.948 kb on + strand at 688.949 kb on - strand at 688.949 kb on - strand at 688.949 kb on - strand at 688.949 kb on - strand at 688.949 kb on - strand at 688.949 kb on - strand at 688.949 kb on - strand at 688.949 kb on - strand at 688.972 kb on + strand at 688.972 kb on + strand at 688.972 kb on + strand at 688.973 kb on - strand at 688.973 kb on - strand at 688.973 kb on - strand at 689.071 kb on - strand, within PP_0590 at 689.165 kb on + strand, within PP_0590 at 689.165 kb on + strand, within PP_0590 at 689.165 kb on + strand, within PP_0590 at 689.166 kb on - strand, within PP_0590 at 689.202 kb on + strand, within PP_0590 at 689.220 kb on + strand, within PP_0590 at 689.220 kb on + strand, within PP_0590 at 689.221 kb on - strand, within PP_0590 at 689.242 kb on + strand, within PP_0590
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Fusaric 480 ug/mL remove 686,227 + +0.2 686,227 + +0.1 686,227 + -0.8 686,227 + -0.5 686,228 - +0.5 686,228 - +0.1 686,228 - -0.5 686,303 + +0.4 686,336 + -0.3 686,336 + -0.0 686,358 - PP_0587 0.15 +0.5 686,410 + PP_0587 0.29 +0.4 686,410 + PP_0587 0.29 -0.7 686,411 - PP_0587 0.29 +1.4 686,411 - PP_0587 0.29 +0.3 686,411 - PP_0587 0.29 +0.9 686,412 + +1.4 686,412 + PP_0587 0.29 +0.3 686,412 + PP_0587 0.29 -0.6 686,412 + PP_0587 0.29 +0.7 686,412 + PP_0587 0.29 +0.3 686,412 + PP_0587 0.29 +0.7 686,413 - PP_0587 0.29 +0.6 686,538 - PP_0587 0.62 +1.0 686,593 + PP_0587 0.76 +0.2 686,600 + PP_0587 0.78 +0.5 686,601 - PP_0587 0.78 -0.9 686,601 - PP_0587 0.78 +1.6 686,824 - -0.0 686,824 - -0.1 686,847 + +1.3 686,847 + +0.6 686,847 + -0.5 686,848 - +0.7 687,009 - -0.0 687,098 + -4.7 687,117 - +0.9 687,125 - +0.8 687,202 + +1.5 687,202 + +0.9 687,202 + +0.6 687,203 - +0.2 687,278 - +2.4 687,278 - PP_0589 0.12 +0.6 687,294 + PP_0589 0.13 +0.2 687,311 - PP_0589 0.15 -0.2 687,363 + PP_0589 0.19 +1.2 687,397 + PP_0589 0.22 -0.4 687,693 + PP_0589 0.47 -0.6 687,693 + PP_0589 0.47 -0.6 687,693 + PP_0589 0.47 +0.8 687,693 + PP_0589 0.47 +1.7 687,693 + PP_0589 0.47 -0.0 687,693 + PP_0589 0.47 -0.2 687,694 - PP_0589 0.47 +0.6 687,808 + PP_0589 0.57 +0.2 687,808 + PP_0589 0.57 +1.0 687,811 - PP_0589 0.57 +1.1 687,844 + PP_0589 0.60 +1.0 687,866 - +2.7 687,883 - PP_0589 0.63 +0.6 687,900 + PP_0589 0.65 +1.1 687,980 - PP_0589 0.71 +0.8 687,980 - PP_0589 0.71 +0.2 688,065 + PP_0589 0.79 +1.6 688,065 + PP_0589 0.79 +1.3 688,175 + PP_0589 0.88 +1.2 688,176 - PP_0589 0.88 +1.0 688,176 - PP_0589 0.88 +0.5 688,206 - -0.1 688,206 - +0.4 688,451 + PP_5446 0.70 +0.3 688,452 - PP_5446 0.71 -0.6 688,452 - PP_5446 0.71 -0.3 688,473 + PP_5446 0.83 -1.7 688,473 + PP_5446 0.83 +0.3 688,473 + PP_5446 0.83 -0.4 688,473 + PP_5446 0.83 -0.4 688,473 + PP_5446 0.83 +0.1 688,473 + PP_5446 0.83 -0.5 688,474 - PP_5446 0.83 -0.5 688,474 - PP_5446 0.83 +1.1 688,474 - PP_5446 0.83 +0.6 688,502 + -0.4 688,502 + -1.3 688,503 - +0.5 688,503 - -0.5 688,555 + -0.6 688,555 + +0.1 688,555 + +0.3 688,555 + -0.2 688,587 - +0.9 688,639 - +1.7 688,793 + +1.1 688,793 + +1.4 688,793 + -0.1 688,793 + -0.1 688,817 + +0.5 688,817 + -0.3 688,818 - +0.2 688,859 + +0.8 688,860 - -0.9 688,860 - +0.1 688,860 - -0.1 688,861 + -2.1 688,946 + -0.1 688,946 + -0.5 688,946 + -1.4 688,946 + -0.4 688,946 + -0.6 688,947 - +0.4 688,948 + -0.2 688,948 + +0.8 688,948 + -0.3 688,948 + -0.6 688,948 + +0.9 688,948 + -2.1 688,949 - +0.6 688,949 - -0.0 688,949 - -2.5 688,949 - +0.5 688,949 - -0.7 688,949 - +0.3 688,949 - +0.2 688,949 - +0.8 688,972 + +0.2 688,972 + -1.1 688,972 + +1.2 688,973 - +1.2 688,973 - -0.4 688,973 - +2.6 689,071 - PP_0590 0.16 -0.2 689,165 + PP_0590 0.29 -0.3 689,165 + PP_0590 0.29 +2.3 689,165 + PP_0590 0.29 +0.3 689,166 - PP_0590 0.30 +0.0 689,202 + PP_0590 0.35 -0.4 689,220 + PP_0590 0.37 -0.2 689,220 + PP_0590 0.37 +0.5 689,221 - PP_0590 0.37 +0.7 689,242 + PP_0590 0.40 +0.1
Or see this region's nucleotide sequence