Strain Fitness in Pseudomonas putida KT2440 around PP_0157

Experiment: R2A with Fusaric 480 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0156 and PP_0157 are separated by 419 nucleotidesPP_0157 and PP_0158 are separated by 160 nucleotides PP_0156: PP_0156 - pyridine nucleotide transhydrogenase subunit alpha, at 165,785 to 166,906 _0156 PP_0157: PP_0157 - transcriptional activator of gcdH, LysR family, at 167,326 to 168,243 _0157 PP_0158: PP_0158 - glutaryl-CoA dehydrogenase, at 168,404 to 169,585 _0158 Position (kb) 167 168 169Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 166.400 kb on + strand, within PP_0156at 166.464 kb on + strand, within PP_0156at 166.464 kb on + strand, within PP_0156at 166.465 kb on - strand, within PP_0156at 166.465 kb on - strand, within PP_0156at 166.465 kb on - strand, within PP_0156at 166.494 kb on + strand, within PP_0156at 166.494 kb on + strand, within PP_0156at 166.495 kb on - strand, within PP_0156at 166.495 kb on - strand, within PP_0156at 166.580 kb on - strand, within PP_0156at 166.700 kb on + strand, within PP_0156at 166.716 kb on + strand, within PP_0156at 166.716 kb on + strand, within PP_0156at 166.910 kb on + strandat 166.910 kb on + strandat 166.910 kb on + strandat 166.910 kb on + strandat 166.910 kb on + strandat 166.911 kb on - strandat 166.911 kb on - strandat 166.911 kb on - strandat 166.940 kb on + strandat 166.941 kb on - strandat 166.941 kb on - strandat 167.076 kb on + strandat 167.076 kb on + strandat 167.185 kb on - strandat 167.191 kb on - strandat 167.208 kb on + strandat 167.225 kb on + strandat 167.239 kb on - strandat 167.285 kb on - strandat 167.285 kb on - strandat 167.285 kb on - strandat 167.286 kb on + strandat 167.286 kb on + strandat 167.286 kb on + strandat 167.286 kb on + strandat 167.286 kb on + strandat 167.286 kb on + strandat 167.286 kb on + strandat 167.286 kb on + strandat 167.286 kb on + strandat 167.287 kb on - strandat 167.287 kb on - strandat 167.287 kb on - strandat 167.290 kb on + strandat 167.290 kb on + strandat 167.290 kb on + strandat 167.290 kb on + strandat 167.290 kb on + strandat 167.290 kb on + strandat 167.290 kb on + strandat 167.290 kb on + strandat 167.290 kb on + strandat 167.290 kb on + strandat 167.290 kb on + strandat 167.290 kb on + strandat 167.290 kb on + strandat 167.290 kb on + strandat 167.290 kb on + strandat 167.290 kb on + strandat 167.291 kb on - strandat 167.291 kb on - strandat 167.291 kb on - strandat 167.291 kb on - strandat 167.291 kb on - strandat 167.291 kb on - strandat 167.291 kb on - strandat 167.291 kb on - strandat 167.291 kb on - strandat 167.291 kb on - strandat 167.298 kb on + strandat 167.307 kb on - strandat 167.352 kb on + strandat 167.352 kb on + strandat 167.352 kb on + strandat 167.352 kb on + strandat 167.352 kb on + strandat 167.353 kb on - strandat 167.353 kb on - strandat 167.353 kb on - strandat 167.353 kb on - strandat 167.356 kb on + strandat 167.356 kb on + strandat 167.356 kb on + strandat 167.356 kb on + strandat 167.356 kb on + strandat 167.356 kb on + strandat 167.357 kb on - strandat 167.357 kb on - strandat 167.357 kb on - strandat 167.357 kb on - strandat 167.357 kb on - strandat 167.357 kb on - strandat 167.360 kb on + strandat 167.360 kb on + strandat 167.361 kb on - strandat 167.361 kb on - strandat 167.378 kb on - strandat 167.441 kb on + strand, within PP_0157at 167.441 kb on + strand, within PP_0157at 167.442 kb on - strand, within PP_0157at 167.442 kb on - strand, within PP_0157at 167.442 kb on - strand, within PP_0157at 167.445 kb on - strand, within PP_0157at 167.445 kb on - strand, within PP_0157at 167.445 kb on - strand, within PP_0157at 167.458 kb on - strand, within PP_0157at 167.476 kb on - strand, within PP_0157at 167.527 kb on + strand, within PP_0157at 167.528 kb on - strand, within PP_0157at 167.578 kb on + strand, within PP_0157at 167.578 kb on + strand, within PP_0157at 167.578 kb on + strand, within PP_0157at 167.579 kb on - strand, within PP_0157at 167.579 kb on - strand, within PP_0157at 167.585 kb on + strand, within PP_0157at 167.586 kb on - strand, within PP_0157at 167.807 kb on + strand, within PP_0157at 167.808 kb on - strand, within PP_0157at 167.808 kb on - strand, within PP_0157at 167.827 kb on - strand, within PP_0157at 167.827 kb on - strand, within PP_0157at 167.914 kb on + strand, within PP_0157at 167.915 kb on - strand, within PP_0157at 167.994 kb on + strand, within PP_0157at 167.994 kb on + strand, within PP_0157at 167.995 kb on - strand, within PP_0157at 168.039 kb on - strand, within PP_0157at 168.099 kb on + strand, within PP_0157at 168.174 kb on + strandat 168.245 kb on + strandat 168.262 kb on + strandat 168.263 kb on - strandat 168.263 kb on - strandat 168.263 kb on - strandat 168.263 kb on - strandat 168.274 kb on + strandat 168.275 kb on - strandat 168.275 kb on - strandat 168.358 kb on - strandat 168.386 kb on + strandat 168.386 kb on + strandat 168.621 kb on - strand, within PP_0158at 168.641 kb on + strand, within PP_0158at 168.641 kb on + strand, within PP_0158at 168.641 kb on + strand, within PP_0158at 168.641 kb on + strand, within PP_0158at 168.641 kb on + strand, within PP_0158at 168.641 kb on + strand, within PP_0158at 168.642 kb on - strand, within PP_0158at 168.642 kb on - strand, within PP_0158at 168.642 kb on - strand, within PP_0158at 168.642 kb on - strand, within PP_0158at 168.642 kb on - strand, within PP_0158at 168.650 kb on + strand, within PP_0158at 168.650 kb on + strand, within PP_0158at 168.650 kb on + strand, within PP_0158at 168.651 kb on - strand, within PP_0158at 168.658 kb on + strand, within PP_0158at 168.773 kb on + strand, within PP_0158at 168.829 kb on + strand, within PP_0158at 168.830 kb on - strand, within PP_0158at 169.160 kb on + strand, within PP_0158at 169.160 kb on + strand, within PP_0158at 169.160 kb on + strand, within PP_0158at 169.160 kb on + strand, within PP_0158at 169.161 kb on - strand, within PP_0158at 169.165 kb on + strand, within PP_0158at 169.220 kb on + strand, within PP_0158at 169.220 kb on + strand, within PP_0158at 169.220 kb on + strand, within PP_0158at 169.221 kb on - strand, within PP_0158

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Fusaric 480 ug/mL
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166,400 + PP_0156 0.55 -0.5
166,464 + PP_0156 0.61 -1.0
166,464 + PP_0156 0.61 -0.2
166,465 - PP_0156 0.61 +0.0
166,465 - PP_0156 0.61 +1.8
166,465 - PP_0156 0.61 +0.2
166,494 + PP_0156 0.63 +0.1
166,494 + PP_0156 0.63 +0.8
166,495 - PP_0156 0.63 -0.3
166,495 - PP_0156 0.63 +1.5
166,580 - PP_0156 0.71 +0.6
166,700 + PP_0156 0.82 +0.2
166,716 + PP_0156 0.83 -1.6
166,716 + PP_0156 0.83 -3.1
166,910 + +1.4
166,910 + +0.3
166,910 + +0.4
166,910 + +0.3
166,910 + +0.3
166,911 - +0.5
166,911 - +0.6
166,911 - +0.3
166,940 + +0.1
166,941 - +0.4
166,941 - +1.8
167,076 + -0.6
167,076 + +0.2
167,185 - -1.3
167,191 - -0.8
167,208 + +0.4
167,225 + +0.3
167,239 - +1.8
167,285 - -0.1
167,285 - +1.0
167,285 - +0.3
167,286 + -0.7
167,286 + +0.1
167,286 + -0.1
167,286 + +0.3
167,286 + -0.3
167,286 + -0.1
167,286 + -0.6
167,286 + -0.2
167,286 + +0.8
167,287 - -0.8
167,287 - -0.6
167,287 - +0.3
167,290 + +0.5
167,290 + -0.3
167,290 + -2.4
167,290 + +0.7
167,290 + +1.3
167,290 + -0.4
167,290 + -0.6
167,290 + -0.3
167,290 + +0.4
167,290 + +0.6
167,290 + -1.0
167,290 + -0.4
167,290 + -0.4
167,290 + +0.8
167,290 + -0.1
167,290 + -0.3
167,291 - +0.9
167,291 - +0.2
167,291 - -0.4
167,291 - -0.1
167,291 - +0.5
167,291 - +0.6
167,291 - +0.5
167,291 - +0.3
167,291 - +0.5
167,291 - -0.0
167,298 + +1.2
167,307 - -0.4
167,352 + -1.1
167,352 + -0.5
167,352 + +0.1
167,352 + +1.1
167,352 + +0.3
167,353 - +0.4
167,353 - -1.4
167,353 - -0.3
167,353 - -0.1
167,356 + +0.1
167,356 + +0.8
167,356 + -0.1
167,356 + +0.8
167,356 + -0.0
167,356 + +1.5
167,357 - +0.3
167,357 - +1.4
167,357 - -0.3
167,357 - +0.9
167,357 - -1.5
167,357 - -0.4
167,360 + -2.1
167,360 + -0.8
167,361 - -0.9
167,361 - -0.6
167,378 - +0.5
167,441 + PP_0157 0.13 -0.8
167,441 + PP_0157 0.13 -0.9
167,442 - PP_0157 0.13 +0.6
167,442 - PP_0157 0.13 -0.6
167,442 - PP_0157 0.13 +0.3
167,445 - PP_0157 0.13 +0.3
167,445 - PP_0157 0.13 -1.2
167,445 - PP_0157 0.13 -0.2
167,458 - PP_0157 0.14 -1.0
167,476 - PP_0157 0.16 -0.3
167,527 + PP_0157 0.22 -0.7
167,528 - PP_0157 0.22 -0.2
167,578 + PP_0157 0.27 -0.4
167,578 + PP_0157 0.27 -1.0
167,578 + PP_0157 0.27 -0.8
167,579 - PP_0157 0.28 -1.2
167,579 - PP_0157 0.28 -1.8
167,585 + PP_0157 0.28 -1.0
167,586 - PP_0157 0.28 -1.1
167,807 + PP_0157 0.52 -1.1
167,808 - PP_0157 0.53 -0.6
167,808 - PP_0157 0.53 -0.6
167,827 - PP_0157 0.55 +0.1
167,827 - PP_0157 0.55 -1.1
167,914 + PP_0157 0.64 +0.2
167,915 - PP_0157 0.64 +0.8
167,994 + PP_0157 0.73 +0.6
167,994 + PP_0157 0.73 -2.0
167,995 - PP_0157 0.73 +0.2
168,039 - PP_0157 0.78 +0.0
168,099 + PP_0157 0.84 +0.3
168,174 + +0.8
168,245 + +0.8
168,262 + -3.6
168,263 - +0.3
168,263 - +0.3
168,263 - -0.2
168,263 - +0.0
168,274 + -1.7
168,275 - -0.8
168,275 - -0.4
168,358 - +0.1
168,386 + -0.9
168,386 + -0.0
168,621 - PP_0158 0.18 +0.2
168,641 + PP_0158 0.20 +0.7
168,641 + PP_0158 0.20 +0.4
168,641 + PP_0158 0.20 +0.6
168,641 + PP_0158 0.20 -1.3
168,641 + PP_0158 0.20 +0.1
168,641 + PP_0158 0.20 -0.4
168,642 - PP_0158 0.20 +0.2
168,642 - PP_0158 0.20 +0.2
168,642 - PP_0158 0.20 -0.0
168,642 - PP_0158 0.20 -1.3
168,642 - PP_0158 0.20 -0.4
168,650 + PP_0158 0.21 -0.5
168,650 + PP_0158 0.21 +1.3
168,650 + PP_0158 0.21 +0.2
168,651 - PP_0158 0.21 -0.5
168,658 + PP_0158 0.21 -0.8
168,773 + PP_0158 0.31 -1.9
168,829 + PP_0158 0.36 -0.3
168,830 - PP_0158 0.36 +0.2
169,160 + PP_0158 0.64 -0.6
169,160 + PP_0158 0.64 -1.3
169,160 + PP_0158 0.64 -0.1
169,160 + PP_0158 0.64 -0.6
169,161 - PP_0158 0.64 -1.4
169,165 + PP_0158 0.64 -2.8
169,220 + PP_0158 0.69 -0.5
169,220 + PP_0158 0.69 -0.1
169,220 + PP_0158 0.69 +0.2
169,221 - PP_0158 0.69 +1.3

Or see this region's nucleotide sequence