Strain Fitness in Pseudomonas putida KT2440 around PP_0130

Experiment: R2A with Fusaric 480 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0129 and PP_0130 are separated by 73 nucleotidesPP_0130 and PP_0131 are separated by 195 nucleotides PP_0129: PP_0129 - GGDEF domain protein, at 134,105 to 136,042 _0129 PP_0130: PP_0130 - 1,6-anhydro-N-acetylmuramyl-L-alanine amidase, at 136,116 to 136,904 _0130 PP_0131: PP_0131 - putative membrane-anchored phosphodiesterase, at 137,100 to 138,707 _0131 Position (kb) 136 137Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 135.125 kb on + strand, within PP_0129at 135.126 kb on - strand, within PP_0129at 135.126 kb on - strand, within PP_0129at 135.160 kb on - strand, within PP_0129at 135.160 kb on - strand, within PP_0129at 135.207 kb on - strand, within PP_0129at 135.207 kb on - strand, within PP_0129at 135.283 kb on + strand, within PP_0129at 135.283 kb on + strand, within PP_0129at 135.283 kb on + strand, within PP_0129at 135.283 kb on + strand, within PP_0129at 135.283 kb on + strand, within PP_0129at 135.283 kb on + strand, within PP_0129at 135.283 kb on + strand, within PP_0129at 135.284 kb on - strand, within PP_0129at 135.284 kb on - strand, within PP_0129at 135.284 kb on - strand, within PP_0129at 135.284 kb on - strand, within PP_0129at 135.704 kb on + strand, within PP_0129at 135.704 kb on + strand, within PP_0129at 135.704 kb on + strand, within PP_0129at 135.704 kb on + strand, within PP_0129at 135.704 kb on + strand, within PP_0129at 135.704 kb on + strand, within PP_0129at 135.704 kb on + strand, within PP_0129at 135.704 kb on + strand, within PP_0129at 135.704 kb on + strand, within PP_0129at 135.704 kb on + strand, within PP_0129at 135.704 kb on + strand, within PP_0129at 135.705 kb on - strand, within PP_0129at 135.705 kb on - strand, within PP_0129at 135.705 kb on - strand, within PP_0129at 135.705 kb on - strand, within PP_0129at 135.705 kb on - strand, within PP_0129at 135.705 kb on - strand, within PP_0129at 135.705 kb on - strand, within PP_0129at 135.705 kb on - strand, within PP_0129at 135.705 kb on - strand, within PP_0129at 135.705 kb on - strand, within PP_0129at 135.705 kb on - strand, within PP_0129at 135.830 kb on - strand, within PP_0129at 136.021 kb on + strandat 136.022 kb on - strandat 136.082 kb on + strandat 136.082 kb on + strandat 136.082 kb on + strandat 136.082 kb on + strandat 136.083 kb on - strandat 136.083 kb on - strandat 136.085 kb on - strandat 136.098 kb on + strandat 136.156 kb on + strandat 136.156 kb on + strandat 136.157 kb on - strandat 136.157 kb on - strandat 136.251 kb on + strand, within PP_0130at 136.251 kb on + strand, within PP_0130at 136.251 kb on + strand, within PP_0130at 136.251 kb on + strand, within PP_0130at 136.252 kb on - strand, within PP_0130at 136.252 kb on - strand, within PP_0130at 136.252 kb on - strand, within PP_0130at 136.252 kb on - strand, within PP_0130at 136.252 kb on - strand, within PP_0130at 136.290 kb on - strand, within PP_0130at 136.314 kb on + strand, within PP_0130at 136.314 kb on + strand, within PP_0130at 136.315 kb on - strand, within PP_0130at 136.315 kb on - strand, within PP_0130at 136.337 kb on + strand, within PP_0130at 136.344 kb on + strand, within PP_0130at 136.344 kb on + strand, within PP_0130at 136.344 kb on + strand, within PP_0130at 136.344 kb on + strand, within PP_0130at 136.345 kb on - strand, within PP_0130at 136.345 kb on - strand, within PP_0130at 136.345 kb on - strand, within PP_0130at 136.354 kb on + strand, within PP_0130at 136.354 kb on + strand, within PP_0130at 136.354 kb on + strand, within PP_0130at 136.355 kb on - strand, within PP_0130at 136.355 kb on - strand, within PP_0130at 136.355 kb on - strandat 136.491 kb on + strand, within PP_0130at 136.491 kb on + strand, within PP_0130at 136.491 kb on + strand, within PP_0130at 136.568 kb on + strand, within PP_0130at 136.659 kb on - strand, within PP_0130at 136.698 kb on + strand, within PP_0130at 136.698 kb on + strand, within PP_0130at 136.699 kb on - strand, within PP_0130at 136.699 kb on - strand, within PP_0130at 136.732 kb on - strand, within PP_0130at 136.850 kb on + strandat 136.851 kb on - strandat 136.885 kb on + strandat 136.885 kb on + strandat 136.886 kb on - strandat 136.974 kb on + strandat 136.983 kb on - strandat 136.983 kb on - strandat 137.014 kb on + strandat 137.014 kb on + strandat 137.064 kb on + strandat 137.079 kb on + strandat 137.079 kb on + strandat 137.081 kb on + strandat 137.082 kb on - strandat 137.082 kb on - strandat 137.090 kb on + strandat 137.412 kb on + strand, within PP_0131at 137.412 kb on + strand, within PP_0131at 137.413 kb on - strand, within PP_0131at 137.424 kb on + strand, within PP_0131at 137.424 kb on + strand, within PP_0131at 137.424 kb on + strand, within PP_0131at 137.425 kb on - strand, within PP_0131at 137.425 kb on - strand, within PP_0131at 137.425 kb on - strand, within PP_0131at 137.425 kb on - strand, within PP_0131at 137.425 kb on - strand, within PP_0131at 137.428 kb on + strand, within PP_0131at 137.428 kb on + strand, within PP_0131at 137.428 kb on + strand, within PP_0131at 137.428 kb on + strand, within PP_0131at 137.428 kb on + strand, within PP_0131at 137.428 kb on + strand, within PP_0131at 137.429 kb on - strand, within PP_0131at 137.429 kb on - strand, within PP_0131at 137.429 kb on - strand, within PP_0131at 137.429 kb on - strand, within PP_0131at 137.429 kb on - strand, within PP_0131at 137.429 kb on - strand, within PP_0131at 137.429 kb on - strand, within PP_0131at 137.495 kb on + strand, within PP_0131at 137.511 kb on + strand, within PP_0131at 137.511 kb on + strand, within PP_0131at 137.512 kb on - strand, within PP_0131at 137.512 kb on - strand, within PP_0131at 137.512 kb on - strand, within PP_0131at 137.512 kb on - strand, within PP_0131at 137.512 kb on - strand, within PP_0131at 137.517 kb on + strand, within PP_0131at 137.517 kb on + strand, within PP_0131at 137.517 kb on + strand, within PP_0131at 137.517 kb on + strand, within PP_0131at 137.526 kb on - strand, within PP_0131at 137.526 kb on - strand, within PP_0131at 137.526 kb on - strand, within PP_0131at 137.704 kb on + strand, within PP_0131at 137.704 kb on + strand, within PP_0131at 137.704 kb on + strand, within PP_0131at 137.704 kb on + strand, within PP_0131at 137.704 kb on + strand, within PP_0131at 137.704 kb on + strand, within PP_0131at 137.705 kb on - strand, within PP_0131at 137.705 kb on - strand, within PP_0131at 137.799 kb on + strand, within PP_0131

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Fusaric 480 ug/mL
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135,125 + PP_0129 0.53 -0.3
135,126 - PP_0129 0.53 +0.2
135,126 - PP_0129 0.53 -0.8
135,160 - PP_0129 0.54 -0.1
135,160 - PP_0129 0.54 -0.8
135,207 - PP_0129 0.57 -1.1
135,207 - PP_0129 0.57 -1.0
135,283 + PP_0129 0.61 +0.1
135,283 + PP_0129 0.61 +0.8
135,283 + PP_0129 0.61 +0.5
135,283 + PP_0129 0.61 -1.5
135,283 + PP_0129 0.61 -0.8
135,283 + PP_0129 0.61 -0.4
135,283 + PP_0129 0.61 -0.7
135,284 - PP_0129 0.61 +0.6
135,284 - PP_0129 0.61 +0.1
135,284 - PP_0129 0.61 +0.3
135,284 - PP_0129 0.61 +0.2
135,704 + PP_0129 0.83 +0.4
135,704 + PP_0129 0.83 -1.1
135,704 + PP_0129 0.83 -0.0
135,704 + PP_0129 0.83 +0.8
135,704 + PP_0129 0.83 -0.5
135,704 + PP_0129 0.83 -1.6
135,704 + PP_0129 0.83 +0.3
135,704 + PP_0129 0.83 -0.4
135,704 + PP_0129 0.83 -0.9
135,704 + PP_0129 0.83 +0.0
135,704 + PP_0129 0.83 +0.5
135,705 - PP_0129 0.83 -0.5
135,705 - PP_0129 0.83 -1.0
135,705 - PP_0129 0.83 +0.1
135,705 - PP_0129 0.83 -0.5
135,705 - PP_0129 0.83 -0.6
135,705 - PP_0129 0.83 -0.2
135,705 - PP_0129 0.83 -0.6
135,705 - PP_0129 0.83 +0.8
135,705 - PP_0129 0.83 -2.6
135,705 - PP_0129 0.83 -0.4
135,705 - PP_0129 0.83 -0.5
135,830 - PP_0129 0.89 -2.0
136,021 + +0.5
136,022 - -1.0
136,082 + +0.1
136,082 + +0.3
136,082 + -0.0
136,082 + -1.3
136,083 - -3.3
136,083 - -0.7
136,085 - +0.2
136,098 + -0.4
136,156 + -2.0
136,156 + -0.6
136,157 - +0.7
136,157 - +0.4
136,251 + PP_0130 0.17 -1.1
136,251 + PP_0130 0.17 -3.5
136,251 + PP_0130 0.17 -1.9
136,251 + PP_0130 0.17 -0.3
136,252 - PP_0130 0.17 -0.2
136,252 - PP_0130 0.17 -1.2
136,252 - PP_0130 0.17 -2.6
136,252 - PP_0130 0.17 -0.8
136,252 - PP_0130 0.17 -0.8
136,290 - PP_0130 0.22 -2.2
136,314 + PP_0130 0.25 -1.6
136,314 + PP_0130 0.25 -0.1
136,315 - PP_0130 0.25 -0.3
136,315 - PP_0130 0.25 -2.0
136,337 + PP_0130 0.28 -0.7
136,344 + PP_0130 0.29 -0.2
136,344 + PP_0130 0.29 -2.6
136,344 + PP_0130 0.29 -0.2
136,344 + PP_0130 0.29 -0.6
136,345 - PP_0130 0.29 -0.8
136,345 - PP_0130 0.29 -2.5
136,345 - PP_0130 0.29 -2.4
136,354 + PP_0130 0.30 -0.5
136,354 + PP_0130 0.30 -2.7
136,354 + PP_0130 0.30 -1.5
136,355 - PP_0130 0.30 -2.2
136,355 - PP_0130 0.30 -2.2
136,355 - -0.4
136,491 + PP_0130 0.48 -3.1
136,491 + PP_0130 0.48 -2.0
136,491 + PP_0130 0.48 -0.7
136,568 + PP_0130 0.57 -1.3
136,659 - PP_0130 0.69 -1.6
136,698 + PP_0130 0.74 -0.6
136,698 + PP_0130 0.74 -0.6
136,699 - PP_0130 0.74 -2.1
136,699 - PP_0130 0.74 -1.6
136,732 - PP_0130 0.78 -0.9
136,850 + -3.3
136,851 - -1.4
136,885 + -0.6
136,885 + -1.1
136,886 - -0.2
136,974 + +0.1
136,983 - +0.3
136,983 - -3.6
137,014 + +0.0
137,014 + -0.6
137,064 + -0.1
137,079 + +0.3
137,079 + +0.7
137,081 + +0.5
137,082 - +2.2
137,082 - -0.1
137,090 + -0.2
137,412 + PP_0131 0.19 +0.1
137,412 + PP_0131 0.19 +0.0
137,413 - PP_0131 0.19 +0.5
137,424 + PP_0131 0.20 -1.0
137,424 + PP_0131 0.20 -1.2
137,424 + PP_0131 0.20 -0.5
137,425 - PP_0131 0.20 -1.0
137,425 - PP_0131 0.20 +0.1
137,425 - PP_0131 0.20 +0.8
137,425 - PP_0131 0.20 +1.3
137,425 - PP_0131 0.20 +1.4
137,428 + PP_0131 0.20 -0.6
137,428 + PP_0131 0.20 -0.2
137,428 + PP_0131 0.20 +0.4
137,428 + PP_0131 0.20 -0.5
137,428 + PP_0131 0.20 +1.6
137,428 + PP_0131 0.20 -0.7
137,429 - PP_0131 0.20 +0.9
137,429 - PP_0131 0.20 -1.4
137,429 - PP_0131 0.20 +0.7
137,429 - PP_0131 0.20 -0.5
137,429 - PP_0131 0.20 -0.8
137,429 - PP_0131 0.20 -0.3
137,429 - PP_0131 0.20 +0.5
137,495 + PP_0131 0.25 -0.6
137,511 + PP_0131 0.26 +0.0
137,511 + PP_0131 0.26 +0.6
137,512 - PP_0131 0.26 -0.2
137,512 - PP_0131 0.26 -0.2
137,512 - PP_0131 0.26 -1.2
137,512 - PP_0131 0.26 +1.2
137,512 - PP_0131 0.26 -0.1
137,517 + PP_0131 0.26 -1.1
137,517 + PP_0131 0.26 -3.2
137,517 + PP_0131 0.26 +0.7
137,517 + PP_0131 0.26 +0.6
137,526 - PP_0131 0.26 -0.6
137,526 - PP_0131 0.26 -0.1
137,526 - PP_0131 0.26 -1.3
137,704 + PP_0131 0.38 +0.5
137,704 + PP_0131 0.38 +0.7
137,704 + PP_0131 0.38 +0.6
137,704 + PP_0131 0.38 -0.8
137,704 + PP_0131 0.38 -0.1
137,704 + PP_0131 0.38 -0.7
137,705 - PP_0131 0.38 -0.5
137,705 - PP_0131 0.38 -0.3
137,799 + PP_0131 0.43 -1.5

Or see this region's nucleotide sequence