Strain Fitness in Pseudomonas putida KT2440 around PP_5095

Experiment: R2A with Fusaric 480 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 480 ug/mL
5,817,833	+		PP_5093	0.88	-0.3
5,817,941	+				-0.4
5,817,941	+				+1.0
5,817,941	+				-2.2
5,817,941	+				+0.0
5,817,942	-				-0.9
5,817,942	-				-1.1
5,817,942	-				+0.6
5,817,942	-				+0.0
5,817,942	-				+0.1
5,817,969	+				-0.4
5,817,969	+				+1.5
5,817,970	-				+2.5
5,817,970	-				-1.0
5,817,970	-				+0.3
5,818,017	+				+1.1
5,818,018	-				-0.1
5,818,018	-				+0.7
5,818,178	+		PP_5094	0.25	-0.5
5,818,182	+		PP_5094	0.25	+0.6
5,818,183	-		PP_5094	0.26	-3.5
5,818,183	-		PP_5094	0.26	-0.1
5,818,405	+		PP_5094	0.58	-1.6
5,818,405	+		PP_5094	0.58	-0.2
5,818,405	+		PP_5094	0.58	-0.8
5,818,406	-		PP_5094	0.58	-0.4
5,818,431	+		PP_5094	0.62	-0.1
5,818,746	+				-1.8
5,818,746	+				+0.2
5,818,746	+				-2.0
5,818,747	-				-1.5
5,818,747	-				+0.3
5,818,747	-				-0.4
5,818,747	-				-3.1
5,818,747	-				-2.4
5,818,747	-				-0.0
5,818,968	-		PP_5095	0.29	-2.0
5,819,128	+		PP_5095	0.48	-0.3
5,819,129	-		PP_5095	0.48	-2.6
5,819,190	-		PP_5095	0.56	-3.1
5,819,548	+				+0.3
5,819,548	+				+0.2
5,819,549	-				+0.5
5,819,558	+				-0.1
5,819,558	+				+1.4
5,819,558	+				-0.9
5,819,558	+				+0.4
5,819,558	+				+1.4
5,819,558	+				-0.2
5,819,559	-				+0.8
5,819,559	-				+0.5
5,819,669	+		PP_5096	0.18	+0.2
5,819,669	+		PP_5096	0.18	-2.4
5,819,670	-		PP_5096	0.18	+0.2
5,819,670	-		PP_5096	0.18	+0.7
5,819,670	-		PP_5096	0.18	-0.7
5,819,740	+		PP_5096	0.30	-4.4
5,819,825	+		PP_5096	0.45	+0.3
5,819,825	+		PP_5096	0.45	-0.4
5,819,826	-		PP_5096	0.45	+0.8
5,819,826	-		PP_5096	0.45	-0.1
5,819,826	-		PP_5096	0.45	+0.8
5,819,826	-		PP_5096	0.45	-0.1
5,819,830	+		PP_5096	0.46	-1.2
5,819,830	+		PP_5096	0.46	+0.1
5,819,831	-		PP_5096	0.46	-0.6
5,819,831	-		PP_5096	0.46	-1.5
5,820,216	+				+1.2
5,820,222	+				-0.9
5,820,222	+				+0.3
5,820,222	+				-2.0
5,820,222	+				+0.0
5,820,223	-				+0.7
5,820,289	-				-0.6
5,820,354	-				-0.8
5,820,366	-		PP_5097	0.10	+1.6
5,820,374	+		PP_5097	0.11	+0.7
5,820,374	+		PP_5097	0.11	+0.2
5,820,374	+		PP_5097	0.11	-3.0
5,820,374	+		PP_5097	0.11	-3.1
5,820,374	+		PP_5097	0.11	+0.7
5,820,374	+		PP_5097	0.11	-1.9
5,820,375	-		PP_5097	0.11	-0.4
5,820,375	-		PP_5097	0.11	-0.5
5,820,375	-		PP_5097	0.11	-2.8
5,820,375	-		PP_5097	0.11	+1.0
5,820,375	-		PP_5097	0.11	+0.5
5,820,375	-		PP_5097	0.11	-0.4
5,820,375	-		PP_5097	0.11	+1.7
5,820,452	+		PP_5097	0.18	-1.9