Strain Fitness in Pseudomonas putida KT2440 around PP_4570

Experiment: R2A with Fusaric 480 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 480 ug/mL
5,188,375	-		PP_4568	0.41	+0.6
5,188,450	+		PP_4568	0.49	-0.1
5,188,476	-		PP_4568	0.52	-1.8
5,188,573	+		PP_4568	0.63	+0.0
5,188,573	+		PP_4568	0.63	+1.0
5,188,574	-		PP_4568	0.63	-0.1
5,188,614	+		PP_4568	0.68	+0.7
5,188,631	+		PP_4568	0.70	+0.3
5,188,631	+		PP_4568	0.70	-0.6
5,188,643	+		PP_4568	0.71	-0.9
5,188,718	-		PP_4568	0.80	-3.4
5,188,854	+				-0.4
5,188,854	+				+0.8
5,188,855	-				+0.4
5,188,911	+				+0.5
5,188,911	+				-0.1
5,188,911	+				+0.2
5,188,912	-				-0.0
5,188,912	-				+0.1
5,188,914	+				+0.8
5,188,914	+				+0.9
5,188,914	+				+0.5
5,188,914	+				+0.8
5,188,922	+				+0.6
5,188,923	-				+1.1
5,188,975	+				+0.4
5,188,976	-				+0.7
5,189,045	+		PP_4569	0.11	+0.4
5,189,046	-		PP_4569	0.12	-1.2
5,189,046	-		PP_4569	0.12	+0.8
5,189,108	-		PP_4569	0.33	-0.5
5,189,347	-				-1.2
5,189,347	-				-4.0
5,189,355	+				-1.8
5,189,355	+				-3.9
5,189,376	-				-3.2
5,189,394	+				-1.9
5,189,549	-		PP_4570	0.23	-3.1
5,189,549	-		PP_4570	0.23	-1.2
5,189,575	+		PP_4570	0.26	-2.2
5,189,649	+		PP_4570	0.34	-4.5
5,189,649	+		PP_4570	0.34	-0.6
5,189,650	-		PP_4570	0.34	-1.5
5,189,650	-		PP_4570	0.34	-2.2
5,189,650	-		PP_4570	0.34	-1.0
5,189,691	+		PP_4570	0.39	-1.6
5,189,691	+		PP_4570	0.39	-2.5
5,189,709	+		PP_4570	0.40	-0.6
5,189,709	+		PP_4570	0.40	-2.2
5,189,710	-		PP_4570	0.41	-1.2
5,189,710	-		PP_4570	0.41	-3.6
5,189,710	-		PP_4570	0.41	+0.0
5,189,907	+		PP_4570	0.62	-2.0
5,189,919	+		PP_4570	0.63	-2.2
5,189,969	-		PP_4570	0.68	-1.0
5,189,989	+		PP_4570	0.70	-3.1
5,189,989	+		PP_4570	0.70	-4.8
5,189,991	+		PP_4570	0.71	-0.4
5,189,991	+		PP_4570	0.71	-2.6
5,189,991	+		PP_4570	0.71	-2.1
5,189,992	-		PP_4570	0.71	-1.5
5,189,992	-		PP_4570	0.71	-2.6
5,189,992	-		PP_4570	0.71	-1.0
5,189,992	-		PP_4570	0.71	-1.8
5,189,992	-		PP_4570	0.71	-2.7
5,190,084	+		PP_4570	0.81	-2.4
5,190,084	+		PP_4570	0.81	-1.8
5,190,085	-		PP_4570	0.81	-0.8
5,190,115	-		PP_4570	0.84	-2.1
5,190,115	-		PP_4570	0.84	-0.9
5,190,129	+		PP_4570	0.85	-3.6
5,190,129	+		PP_4570	0.85	-1.5
5,190,129	+		PP_4570	0.85	-1.2
5,190,130	-		PP_4570	0.85	+1.0
5,190,333	-				-0.6
5,190,494	+				+0.5
5,190,521	-				-0.7
5,190,534	+				-0.4
5,190,597	+		PP_4571	0.16	-0.6
5,190,834	+		PP_4571	0.41	-1.2
5,190,835	-		PP_4571	0.41	-1.1
5,190,835	-		PP_4571	0.41	-2.8
5,190,835	-		PP_4571	0.41	-0.6
5,190,845	+		PP_4571	0.42	-1.6
5,190,846	-		PP_4571	0.42	-0.3
5,190,995	+		PP_4571	0.57	-1.5
5,190,996	-		PP_4571	0.57	-0.2
5,190,996	-		PP_4571	0.57	-0.5
5,190,996	-		PP_4571	0.57	-1.1
5,190,996	-		PP_4571	0.57	-0.2
5,190,996	-		PP_4571	0.57	-2.8
5,191,072	+		PP_4571	0.65	-1.8
5,191,072	+		PP_4571	0.65	+0.9
5,191,073	-		PP_4571	0.65	+0.1
5,191,151	+		PP_4571	0.73	-2.6