Strain Fitness in Pseudomonas putida KT2440 around PP_3764

Experiment: R2A with Fusaric 480 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 480 ug/mL
4,293,166	+				+0.6
4,293,166	+				+0.7
4,293,167	-				+0.1
4,293,210	-				+0.1
4,293,276	+				-0.7
4,293,276	+				-0.6
4,293,276	+				-1.3
4,293,276	+				-3.3
4,293,277	-				+0.1
4,293,277	-				-1.3
4,293,277	-				-0.7
4,293,277	-				-0.1
4,293,277	-				+1.3
4,293,277	-				-2.6
4,293,277	-				-1.4
4,293,280	+				-1.4
4,293,280	+				+0.3
4,293,281	-				-0.1
4,293,281	-				-0.8
4,293,299	-				+1.7
4,293,391	-		PP_3763	0.18	-0.6
4,293,402	+		PP_3763	0.20	-0.5
4,293,403	-		PP_3763	0.20	+1.1
4,293,403	-		PP_3763	0.20	-0.6
4,293,403	-		PP_3763	0.20	-0.3
4,293,403	-		PP_3763	0.20	+0.8
4,293,636	-		PP_3763	0.51	-1.2
4,293,636	-		PP_3763	0.51	+0.8
4,293,729	+		PP_3763	0.63	-2.1
4,293,774	+		PP_3763	0.69	-1.1
4,293,774	+		PP_3763	0.69	-1.0
4,293,825	+		PP_3763	0.76	-0.0
4,293,948	+				-0.0
4,293,948	+				+0.7
4,293,948	+				-0.7
4,293,948	+				-0.3
4,293,949	-				-0.3
4,293,949	-				-0.5
4,293,949	-				+0.6
4,294,052	+				+0.4
4,294,053	-				-0.5
4,294,053	-				+0.7
4,294,072	+				-0.5
4,294,073	-				-0.5
4,294,073	-				-0.9
4,294,073	-				-0.2
4,294,073	-				-1.5
4,294,073	-				+0.2
4,294,090	+				+0.9
4,294,090	+				-0.9
4,294,090	+				-2.6
4,294,091	-				+0.7
4,294,091	-				-2.0
4,294,138	+				+0.7
4,294,138	+				-1.6
4,294,138	+				-0.9
4,294,138	+				-0.1
4,294,139	-				-0.8
4,294,139	-				+0.5
4,294,139	-				+0.9
4,294,151	-				+0.7
4,294,161	-				-0.5
4,294,161	-				+1.8
4,294,170	+				-0.9
4,294,171	-				-0.2
4,294,171	-				-1.0
4,294,171	-				-0.1
4,294,208	-		PP_3764	0.11	-1.0
4,294,268	+		PP_3764	0.15	-0.7
4,294,268	+		PP_3764	0.15	-0.7
4,294,268	+		PP_3764	0.15	-0.5
4,294,283	+		PP_3764	0.16	-1.3
4,294,283	+		PP_3764	0.16	-0.7
4,294,284	-		PP_3764	0.16	-1.3
4,294,284	-		PP_3764	0.16	-0.7
4,294,284	-		PP_3764	0.16	+0.9
4,294,285	+		PP_3764	0.16	-1.4
4,294,333	+		PP_3764	0.20	-1.2
4,294,334	-		PP_3764	0.20	-0.7
4,294,334	-		PP_3764	0.20	+0.0
4,294,334	-		PP_3764	0.20	-1.0
4,294,334	-		PP_3764	0.20	-0.6
4,294,339	+		PP_3764	0.21	-0.8
4,294,340	-		PP_3764	0.21	+0.7
4,294,340	-		PP_3764	0.21	-0.0
4,294,393	+		PP_3764	0.25	+0.6
4,294,393	+		PP_3764	0.25	+0.2
4,294,393	+		PP_3764	0.25	+1.0
4,294,394	-		PP_3764	0.25	+0.2
4,294,406	-		PP_3764	0.26	+0.4
4,294,427	-		PP_3764	0.27	-1.3
4,294,447	+		PP_3764	0.29	-0.5
4,294,447	+		PP_3764	0.29	-0.4
4,294,447	+		PP_3764	0.29	+0.9
4,294,448	-		PP_3764	0.29	-0.8
4,294,492	+		PP_3764	0.32	-0.7
4,294,643	+		PP_3764	0.44	-0.7
4,294,643	+		PP_3764	0.44	+0.2
4,294,644	-		PP_3764	0.44	-0.2
4,294,644	-		PP_3764	0.44	-1.1
4,294,667	-		PP_3764	0.46	-0.8
4,294,696	+		PP_3764	0.48	-3.5
4,294,697	-		PP_3764	0.48	-0.4
4,294,745	-		PP_3764	0.52	-0.3
4,294,804	+		PP_3764	0.56	-2.5
4,294,804	+		PP_3764	0.56	+0.1
4,294,805	-		PP_3764	0.56	+0.5
4,294,903	+		PP_3764	0.64	-0.7
4,294,903	+		PP_3764	0.64	-1.5
4,294,904	-		PP_3764	0.64	+0.4
4,294,940	-		PP_3764	0.67	-0.7
4,294,940	-		PP_3764	0.67	+0.4
4,294,994	-		PP_3764	0.71	+0.9
4,295,126	+		PP_3764	0.81	-1.0
4,295,126	+		PP_3764	0.81	+0.2
4,295,126	+		PP_3764	0.81	-1.3
4,295,126	+				-0.1
4,295,126	+		PP_3764	0.81	-1.0
4,295,127	-		PP_3764	0.81	+0.6
4,295,128	+		PP_3764	0.81	+0.9
4,295,203	+		PP_3764	0.87	-0.1
4,295,204	-		PP_3764	0.87	+0.8
4,295,307	+				-2.2
4,295,308	-				+0.4
4,295,308	-				+1.1
4,295,308	-				+0.1
4,295,308	-				+1.0
4,295,390	+				-0.3
4,295,390	+				-0.3
4,295,391	-				-0.2
4,295,391	-				+0.4
4,295,502	+				-0.1
4,295,541	-				-1.0
4,295,573	-				+0.1
4,295,616	-				+0.4
4,295,706	+				+0.3
4,295,718	+				+0.1
4,295,719	-				-2.1
4,295,719	-				-1.6
4,295,719	-				-0.0
4,295,719	-				+0.2
4,295,719	-				-0.6
4,295,719	-				-0.1
4,295,719	-				+0.1
4,295,719	-				-1.0
4,295,840	+		PP_3765	0.33	+0.0
4,295,840	+		PP_3765	0.33	+1.4
4,295,860	+		PP_3765	0.38	+1.3
4,295,881	-		PP_3765	0.44	-0.5
4,295,968	+		PP_3765	0.68	+0.3
4,295,969	-		PP_3765	0.69	-0.9
4,295,969	-		PP_3765	0.69	+1.0
4,296,046	+				+0.5
4,296,047	-				-0.3
4,296,047	-				-0.1
4,296,047	-				-0.5
4,296,062	+				-0.3
4,296,095	+				+0.4
4,296,095	+				-1.7
4,296,095	+				-0.2
4,296,096	-				-1.1
4,296,096	-				+0.2
4,296,096	-				+0.1
4,296,131	-				-0.2
4,296,151	-				-0.3
4,296,244	+				-0.9
4,296,244	+				+0.4
4,296,245	-				+1.0
4,296,245	-				-1.8